Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2380
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    42   7e-05
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   0.95 
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    26   3.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   3.8  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   5.1  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   8.9  

>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
 Frame = -1

Query: 542 LENRHAYPEFLPDPNPKWRNSLREKL------ERADMLKRRNQIDIPEFYVGSILAVTIA 381
           L+  + +P+ +P P  K   SL EK       E+++  K  ++        G++L V   
Sbjct: 25  LKRPYNFPKPVPGPKHKDVLSLFEKKCRSVLDEQSERFKMFHRSQPNRVRPGAVLLVESY 84

Query: 380 DPH-SQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGVEVRYDLYDPTIHKIQVLR 213
             + S+   NRF G  +  +  G ++   LRNVV   GVE    +Y P I +I VL+
Sbjct: 85  SKYPSKDSVNRFAGYLLRIRHRGPKSSILLRNVVMGVGVEYLLPIYSPQIKRIVVLK 141


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -1

Query: 200 LDDKLFYLRDALPEYSTFSFDMDPEILP----EGTPVPIN 93
           LDD LF L   +  +S F F + P   P       P PIN
Sbjct: 119 LDDFLFALESVVSHHSRFQFSLTPSTTPPPSSASAPFPIN 158


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 593 LKKLRRLGVDLKKVNPLLENRHAYPEFLPDPNP 495
           L+KL ++ + L  ++        Y E LPDP P
Sbjct: 67  LEKLVKVNIFLTDIDDFAAMNEVYKEMLPDPMP 99


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 224  ESCVLLDHIDHSVPQLLDDQQHSLE*TQLSIHIL 325
            ESC+L++H D  +  +LD  Q S +  +++ HIL
Sbjct: 1115 ESCILINHAD-ILSSILDYLQVSKDKRRMATHIL 1147


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 155 YTLAKHHADKIIYHQDAFQHVRLESCVLLDHIDHSVPQLLD 277
           Y +   H +  I   +AF  ++L   V   HID ++  ++D
Sbjct: 767 YPITVRHLESAIRLSEAFAKMQLSEFVRPSHIDKAIQVIID 807


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 544 CWRIDMPTPNFCLIRTLN 491
           C  + MP P FC + +LN
Sbjct: 249 CIYLSMPIPKFCTVESLN 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,816
Number of Sequences: 5004
Number of extensions: 60815
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)