Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2380
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0787 - 5907355-5907457,5908328-5908461,5908542-5908628,590... 62 5e-10
02_04_0041 + 19177225-19177327,19178322-19178433,19178617-191787... 52 5e-07
12_01_0205 - 1540849-1541245,1541361-1541631,1541964-1542196,154... 31 0.98
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 30 1.7
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 29 4.0
06_03_1305 + 29197615-29197779,29198621-29198674,29198781-291988... 29 4.0
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 28 6.9
06_03_0957 + 26307062-26308987 27 9.2
>02_01_0787 -
5907355-5907457,5908328-5908461,5908542-5908628,
5908733-5908924,5909036-5909188
Length = 222
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/94 (35%), Positives = 52/94 (55%)
Frame = -1
Query: 446 KRRNQIDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRNVVDHQGV 267
K R + +IP+ G I+ + + P ++ + + GI I R+ G+ F LR +V GV
Sbjct: 124 KVRGEREIPDVQPGCIIQMRLQVPENKRRESTLKGIVIGRRNAGINTTFRLRRLVAGVGV 183
Query: 266 EVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDAL 165
E + LY P I +I+VL +K KL+YLRD +
Sbjct: 184 ESVFPLYSPNIKEIKVLDRKKVRRAKLYYLRDRM 217
>02_04_0041 +
19177225-19177327,19178322-19178433,19178617-19178728,
19178992-19179078,19179161-19179279,19180204-19180306
Length = 211
Score = 51.6 bits (118), Expect = 5e-07
Identities = 34/101 (33%), Positives = 52/101 (51%)
Frame = -1
Query: 467 LERADMLKRRNQIDIPEFYVGSILAVTIADPHSQGKTNRFVGICIERKGCGLRAEFTLRN 288
+E AD K + +IP+ G IL + + P + + + GI I R+ G+ F LR
Sbjct: 113 MEAAD--KVLGEREIPDVQPGCILQMRLQVPEKKRRESTLKGIVIARRNAGINTTFRLRR 170
Query: 287 VVDHQGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDAL 165
+V GV+ Y P I +I+VL +K KL+YLRD +
Sbjct: 171 LVAGVGVD-----YSPNIKEIKVLDRKKVRRAKLYYLRDRM 206
>12_01_0205 -
1540849-1541245,1541361-1541631,1541964-1542196,
1542339-1542601,1542739-1542915,1543032-1543212,
1543273-1543392,1543513-1543629,1544586-1544645,
1545103-1545224,1545374-1545541
Length = 702
Score = 30.7 bits (66), Expect = 0.98
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = -1
Query: 536 NRHAYPEFLPDPNPKWRNSL---REKLERADMLKRRNQIDIPEFYVGSILAVTIADPHSQ 366
+R A F+PDPNPK+ N + ++K + + +R E Y L TI + S
Sbjct: 507 DRSAAEFFIPDPNPKYLNKIFITKDKYRQYGLWER-----YAELYPDGDLVFTIGE--SD 559
Query: 365 GKTNRFVGICIERKGCGLRA-----EFTLRNVVDHQGVEVRYDLYDPTIHKIQVLRVEKR 201
+ F ++G G A F L VV +R +L + ++QV+ V R
Sbjct: 560 ISKDWFFAHVTRKQGDGYAATTRQIRFRLERVVADATYTLRVELAAAQMARVQVV-VNGR 618
Query: 200 LDDKL 186
D+ L
Sbjct: 619 ADEAL 623
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 566 DLKKVNPLLENRHAYPEFLPDPNPKWRNSLREKLERADML 447
D NP + H YP+ P P P W+ L+ + +D +
Sbjct: 492 DCSTSNPNDVSTHDYPDQAPTPFPDWQQDLQRLMSSSDTI 531
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 471 FSQGITPFRVRIRQKFGVGMSILQQRI 551
F+QG + ++ RIR F G S+ QQRI
Sbjct: 387 FAQGSSVWQQRIRASFAQGSSVWQQRI 413
>06_03_1305 +
29197615-29197779,29198621-29198674,29198781-29198861,
29200167-29200409,29200576-29200710
Length = 225
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 575 LGVDLKKVNPLLENRHAYPEFLPDPN-PKWRNSLREKLERADMLKRRNQIDIPEFYVGSI 399
LG+ K PL+ + E P N W S E L + + K + +DIPEF G +
Sbjct: 118 LGLKFKGKQPLVLEFTSSHELSPAENWHSWEYSSGEWLIKEENKKVKGYLDIPEFSFGEL 177
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 86 KVELKPKPWLERWERQEL 33
K ELKPKP + WE +EL
Sbjct: 312 KSELKPKPRRKNWEEEEL 329
>06_03_0957 + 26307062-26308987
Length = 641
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 521 PEFLPDPNPKWRNSLREKLERADMLKRRNQIDIPEFYVGS 402
PE LPD +R +RE+L + ++ R + +PE Y+ +
Sbjct: 314 PEDLPDEYYAYR--VRERLRKMALVPLRRALHLPEVYISA 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,867
Number of Sequences: 37544
Number of extensions: 385544
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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