Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2380
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006712-1|AAK39323.1|  288|Caenorhabditis elegans Hypothetical ...   210   5e-55
Z93394-7|CAD59169.1|  196|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL117203-25|CAD59172.1|  196|Caenorhabditis elegans Hypothetical...    30   1.5  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    30   1.5  
AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical...    30   1.5  
AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z68217-9|CAN86607.1|  142|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68217-8|CAI59117.1|  156|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z66512-7|CAA91321.1|  730|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00034-4|AAA50642.1|  554|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC006712-1|AAK39323.1|  288|Caenorhabditis elegans Hypothetical
           protein Y119C1B.4 protein.
          Length = 288

 Score =  210 bits (514), Expect = 5e-55
 Identities = 99/169 (58%), Positives = 126/169 (74%)
 Frame = -1

Query: 524 YPEFLPDPNPKWRNSLREKLERADMLKRRNQIDIPEFYVGSILAVTIADPHSQGKTNRFV 345
           YP+FL  P    RN+L+E+LER DML+RR  IDIPEFYVGSI+AVT +D +   K +RFV
Sbjct: 49  YPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRFV 108

Query: 344 GICIERKGCGLRAEFTLRNVVDHQGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDAL 165
           GICI R+  GL  +FTLRN +++ GVEV YDLY+PTI KI+ L++EKRLD+ L YL DAL
Sbjct: 109 GICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLKLEKRLDNDLSYLVDAL 168

Query: 164 PEYSTFSFDMDPEILPEGTPVPINPVKVELKPKPWLERWERQELQGISN 18
           PEYSTF F M+P+  P GTP+P+N  KV+LK  PW  RWE   ++GI +
Sbjct: 169 PEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEVASVRGIED 217


>Z93394-7|CAD59169.1|  196|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1c protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 47  QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 105


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 617 QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 675


>Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 298 QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 356


>AL117203-25|CAD59172.1|  196|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1c protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 47  QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 105


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 617 QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 675


>AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QGVEVRYDLYDPTIHKIQVLRVEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVP 99
           Q  E R  + +PT  +I+  R+++ + D   +   ++  +  F+ + DP   P   PVP
Sbjct: 298 QAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFENASVDSFDNFNAEPDPAPAPALAPVP 356


>AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical
           protein T15B7.14 protein.
          Length = 650

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 226 FKSYVLKSVLMINYFICVMLCQSIALFHLIWTRKY 122
           ++ + LKSVLM+ YF+ + L    A     W + Y
Sbjct: 127 YRGFYLKSVLMLFYFLFIALTSYYAFDTFSWIQHY 161


>Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical
           protein C03E10.6 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 110 FLQVVFPGPYQMKKCYTLAKHHADKIIYHQDAFQ 211
           F  V+FP    + +CY    HH+D I+Y+ D+++
Sbjct: 7   FFVVLFPA---LMECYR--SHHSDDIVYYPDSYE 35


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 365 LVNEDQLLLLPR*TQHKTQVCQSDFYVSTYPPFPTFL 475
           L+N  +L+ L +   H T +  S F V   PP PT +
Sbjct: 116 LLNMSKLITLNQAHSHPTSIAPSSFQVPVIPPPPTLV 152


>Z68217-9|CAN86607.1|  142|Caenorhabditis elegans Hypothetical
           protein F58G6.9b protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 220 SYVLKSVLMI-NYFICVMLCQSIALFHLIWTRK 125
           +Y+L +V M+ + +IC+ LC  +A+ H ++  +
Sbjct: 105 AYILMNVYMVFSVYICLSLCFGLAIGHFVFASR 137


>Z68217-8|CAI59117.1|  156|Caenorhabditis elegans Hypothetical
           protein F58G6.9a protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 220 SYVLKSVLMI-NYFICVMLCQSIALFHLIWTRK 125
           +Y+L +V M+ + +IC+ LC  +A+ H ++  +
Sbjct: 119 AYILMNVYMVFSVYICLSLCFGLAIGHFVFASR 151


>Z66512-7|CAA91321.1|  730|Caenorhabditis elegans Hypothetical
           protein F52H3.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 248 YDPTIHKIQVLR-VEKRLDDKLFYLRDALPEYSTFSFDMD 132
           Y P +HKI  L+ VE + DD+L+Y    L E      +MD
Sbjct: 160 YGPEMHKILKLKSVEDKDDDQLYYTMIYLDEKLRKELNMD 199


>U00034-4|AAA50642.1|  554|Caenorhabditis elegans Hypothetical
           protein C06E8.5 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 212 VEKRLDDKLFYLRDALPEYSTFSFDMDPEILPEGTPVPINPVKVELKPK 66
           +++ LDD  F  R+ L         M  +IL +G P+PI+P+   +KPK
Sbjct: 482 LQEELDDAGFLSREILQR-------MVNDILRQGIPIPIHPLFKLVKPK 523


>AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical
           protein VC5.6 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 104 LEFLQVVFPGPYQMKKCYTLAKHHADKIIYHQDAFQHVRLESCVLLDHIDHSVPQ----L 271
           L+ L + F    Q++K     K  A K ++H +A    R +  +++D I+H+ P+    L
Sbjct: 130 LKSLHLNFTEMLQIRKV-RFPKRRATKTLHHAEALTIFRKDVRLVVDWINHTFPEFSRVL 188

Query: 272 LDDQQHSL 295
             DQQ  L
Sbjct: 189 EPDQQRIL 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,343
Number of Sequences: 27780
Number of extensions: 337055
Number of successful extensions: 1089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)