Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2380
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   2.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 566 DLKKVNPLLENRHAYPEFLPDP 501
           D+  +NP L ++H  P+FL  P
Sbjct: 8   DILPLNPKLYDKHRAPKFLGQP 29


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 435 ISTFQHIRPFQLFSQGITPFRVRIR 509
           I  F+HI P  LF + I P   R+R
Sbjct: 138 IPRFRHIGPSTLFPRFIPPNAYRLR 162


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 532 DMPTPNFCLIRTLNGVIPCEKSWKGRIC 449
           D    NF + R  N +  CE   K  +C
Sbjct: 90  DKKEENFIVDRLRNDLFECENKEKSNVC 117


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 242 PTIHKIQVLRVEKRLDDKLFYLRDA 168
           PT  K  V  +EK +DD  F  + A
Sbjct: 502 PTFEKPLVREIEKTIDDARFIAQHA 526


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 524 RHVYSPTEDSPFLGLRLDVSAFLVT 598
           R    PTE +P + L   VS  LVT
Sbjct: 263 RESLPPTEKTPLISLYYGVSICLVT 287


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 609  PPLEVTKKAETSRRRPKKGESSVGE 535
            PP   + K+ +SRRR ++ + + G+
Sbjct: 1755 PPAATSMKSVSSRRRQQRKQQTPGD 1779


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 609  PPLEVTKKAETSRRRPKKGESSVGE 535
            PP   + K+ +SRRR ++ + + G+
Sbjct: 1751 PPAATSMKSVSSRRRQQRKQQTPGD 1775


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 503 PNPKWRNSLREKLERADMLKRRNQID 426
           P+      L +++   D+LK+RN+ D
Sbjct: 118 PHELKEKHLTQRINSCDLLKKRNEND 143


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 479 LREKLERADMLKRRNQID 426
           L +++   D+LK+RN+ D
Sbjct: 5   LTQRINSCDLLKKRNEND 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,552
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)