Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2378
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R0Z2 Cluster: GLP_25_26499_25402; n=1; Giardia lambli...    36   0.67 
UniRef50_A3IL07 Cluster: Putative uncharacterized protein; n=2; ...    35   1.5  
UniRef50_A6LY06 Cluster: Helix-turn-helix-domain containing prot...    34   3.6  
UniRef50_UPI00006CD339 Cluster: hypothetical protein TTHERM_0027...    33   4.7  

>UniRef50_Q7R0Z2 Cluster: GLP_25_26499_25402; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_25_26499_25402 - Giardia lamblia
           ATCC 50803
          Length = 365

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 588 KSVAFVEKNI--YLILNYSESGPVKRKYVHFNTPLRQVAPS--RSQPTVKR-PVLWPVRL 424
           K+++FV++N    + LNY  +GPV ++ V   TP R V  S   S+   +R   L  +  
Sbjct: 79  KNISFVQRNNGKLISLNYYRNGPVSQQEVDKRTPPRTVRRSTYHSEENEQRIQALSQLLS 138

Query: 423 TRLSDVLYPHSYW 385
           T+ SDV+   S W
Sbjct: 139 TKFSDVILERSIW 151


>UniRef50_A3IL07 Cluster: Putative uncharacterized protein; n=2;
           Chroococcales|Rep: Putative uncharacterized protein -
           Cyanothece sp. CCY 0110
          Length = 156

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -2

Query: 333 ERLNAVRQVLGC--PRLCMSYYCLNRLDFEASITSVRRYHLTGIYGLQHTLPSESL 172
           +RLN + Q L    P+L +S   + ++D   +I+++  YHLTG Y L+  LPS+ +
Sbjct: 58  QRLNPLSQQLNTQKPQLYISNINVKKID-PVTISNLPSYHLTGTYNLKLILPSQEV 112


>UniRef50_A6LY06 Cluster: Helix-turn-helix-domain containing
           protein, AraC type; n=1; Clostridium beijerinckii NCIMB
           8052|Rep: Helix-turn-helix-domain containing protein,
           AraC type - Clostridium beijerinckii NCIMB 8052
          Length = 330

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 128 KKSHKGPTARIIAYNNDSDGRVCCKPYIPVK 220
           KK++  P+   +  NN S GR+C KP IP+K
Sbjct: 96  KKTYSIPSGVNVYINNISQGRICYKPNIPIK 126


>UniRef50_UPI00006CD339 Cluster: hypothetical protein TTHERM_00275930;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00275930 - Tetrahymena thermophila SB210
          Length = 2445

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 480  PPAAMEC*NVRTYVSQGQIQNN*ELNIYFFRQRQQIC 590
            P  A EC   + Y+ QG  +NN  LNIY+   R + C
Sbjct: 2217 PQEAYECEKDQIYLKQGYWRNNNSLNIYYCNNRPENC 2253


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,399,595
Number of Sequences: 1657284
Number of extensions: 14209899
Number of successful extensions: 30244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30243
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)