Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2378
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   3.2  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   3.2  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.6  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   5.6  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    25   9.9  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   9.9  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 525 VKRKYVHFNTPLRQVAPSRSQ 463
           V+R++  +N PLR+ +PS S+
Sbjct: 175 VERRFTEWNVPLRETSPSPSE 195


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 573 VEKNIYLILNYSESGPVKRKYVHFNTPLRQVAP 475
           +E+ ++L+ N  E    KRK+    T L  +AP
Sbjct: 484 LEEQVFLVENMIEDAKAKRKFSEVETLLSSLAP 516


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -2

Query: 543 YSESGPVKRKYVHFNTPLRQVAPSRSQPTVKRPVLWPVRLTRLSDVL 403
           YS++GP++ + +H+     ++ PS+   ++  P   PVRL  +S +L
Sbjct: 129 YSQTGPLRHRRLHYLQD-NKIRPSKIPKSL--PSNSPVRLPYISSLL 172


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = -2

Query: 225 YHLTGIYGLQHTLPSESLLYAIILAVGPLWDFFTRGRARASCEPARITTATMPLITSNVK 46
           YH     G  HTL  E  L+         WD F   R  A+C P+R       ++   + 
Sbjct: 90  YHPEVKMGSYHTLDLE--LHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLA 147

Query: 45  Q*CL 34
             CL
Sbjct: 148 NICL 151


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 407 TSLNLVNLTGHSTGRLTVGCEREGATCRNG 496
           T + L+   GHS G  ++ C+ +G+   +G
Sbjct: 296 TGVELLMQEGHSEGIFSIACQPDGSLVSSG 325


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 234 VRRYH--LTGIYGLQHTLPSESLLYAIILAVGPLWDFFTR 121
           +R YH  L+G+Y L+     + L+ A   AV  +WD  TR
Sbjct: 240 IRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTR 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,374
Number of Sequences: 5004
Number of extensions: 61070
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)