Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2378
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001...    29   2.5  
02_05_0866 - 32331629-32334328                                         29   3.3  
11_06_0541 + 24771145-24775479                                         29   4.4  
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490...    28   7.7  
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167     28   7.7  
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657...    28   7.7  

>06_03_0039 +
           15791968-15792036,15793317-15793847,15799797-15800105,
           15800256-15800772,15800964-15801163,15801303-15801398
          Length = 573

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 10  DQKLSGLRKALLLHITGYKRHGCGSYPCGLTGCPRPTSSKKIPQRPY 150
           D +LSG R    L   G  R GC  +  GL   P    S K+P+  Y
Sbjct: 150 DPRLSGARLGAAL-FAGLARAGCSVFDVGLATTPACFMSTKLPRFSY 195


>02_05_0866 - 32331629-32334328
          Length = 899

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
 Frame = +2

Query: 47  FTLLVIRGMVAVVI------RAGSQDALALPLVKKSHKGPTARI--IAYNNDSDGRVCCK 202
           F L+V+ G V VV       RAG + + +  +  + H+ P +    + Y ND DG     
Sbjct: 453 FVLVVVVGAVIVVSWRKQERRAGRRASRSRDVQLRRHRSPASDSAHLVYGNDDDGNDIVI 512

Query: 203 PYIPVKWYRRTDVMEASKSRRLR 271
           P +P + +   ++ + + S R++
Sbjct: 513 PGLPTR-FTHEEIEDMTNSFRIK 534


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
 Frame = -2

Query: 492 LRQVAPSRSQPTVKRPVLWPVRLTRLSDVLYPHSYWLTYFVIVLL*K--TRQAN*ERLNA 319
           L  V   R+   V     +  ++ +++D+   +++   +  +V + +  T++ N E    
Sbjct: 298 LSMVEEYRASNPVNAMKCYIYKMKKIADICRGYTFKRVFQNVVQIGRMVTQRLNGELERG 357

Query: 318 VRQVLGCPR---LCMSYYCLNRLDFEASITSVRRYH 220
           V  +LG      LC+    L+ L++ A  T VR+YH
Sbjct: 358 VDAMLGLTNKKPLCILLKALDYLEYGADFTDVRKYH 393


>09_02_0535 -
           10346395-10346705,10347100-10347175,10348931-10349070,
           10349294-10349578,10349677-10349718,10350963-10351461,
           10351557-10351723,10352128-10352412,10352695-10352836
          Length = 648

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 35  RHYCFTLLVIRGMVAVVIRAGSQDALALPLVKKSHKG 145
           R YCF LL++  +VAV +   +++    P   K+  G
Sbjct: 3   RSYCFCLLLLSTIVAVTVAVAAEELPPAPTTFKTLNG 39


>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
          Length = 214

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 110 LALPLVKKSHKGPTARIIAYNNDSDGRVCCKPYIPVKWYRRTDVMEASKSRRLRQ*YDMH 289
           L LPL  K   GPT  ++A  +   G  C     P     R  V +  ++RR+ +  ++H
Sbjct: 118 LTLPLRYKEFPGPTLPLLAPWDQGSGPPCSSLEAPRFLSSRAGVRDKVEARRISRAEEIH 177


>01_05_0008 -
           17063377-17063813,17064937-17065052,17065284-17065728,
           17066421-17066760
          Length = 445

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = -2

Query: 258 DFEASITSVRRYHLTGIYGLQHTLPSESLLYAIILAVGPLWDFFTRGRARASCEPARITT 79
           D E+ I       +   Y   H+    +  + ++LAV        R R RA C P R+  
Sbjct: 33  DDESKIRKANPAFVAAAYARLHSSHRAAASFLLLLAVAATAFLIGRARPRADCPPPRLDA 92

Query: 78  ATMPL 64
             + L
Sbjct: 93  RFLAL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,506
Number of Sequences: 37544
Number of extensions: 383676
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)