Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2377
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   6.4  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 380 ICIYLG*NSLLFQHSKT*V*VLCIIPCSP*HCHYDGAQYHF 258
           +C Y G +   ++ S   +   C     P  CHYDG    F
Sbjct: 54  VCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQF 94


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 272  RRRNDNVMDCRVLYIKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFI 424
            + RN + M+ +++ ++P+P+  N E    F    CK     + + F++ F+
Sbjct: 1312 KNRNQH-MNAQIVTVRPLPELNNRELRLEFSVLPCKMYIDQDTLDFLIRFL 1361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,803
Number of Sequences: 5004
Number of extensions: 58345
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)