Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2377
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    29   3.9  
11_03_0157 + 10897769-10898066,10898308-10899461                       28   8.9  
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    28   8.9  

>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 323 IPKFWNAEKVKSFIQDKCKSRTIPENI 403
           I KFW+ E++  F+ ++ ++ ++PEN+
Sbjct: 28  ISKFWSDEELVRFLAERKEAHSLPENV 54


>11_03_0157 + 10897769-10898066,10898308-10899461
          Length = 483

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -3

Query: 426 SMKSNTNFIFSGIVLDLHLSWIKLFTFSAFQNLGIGFMYNTLQSITLSLRRRTISF 259
           S+  N   +F+G    LHL W++L   +A Q L +  +   L S+ L     TISF
Sbjct: 182 SLSDNLPLVFAGAASHLHLPWVRL---TATQLLTVAAVLVALPSLWLR-DLSTISF 233


>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
            18156654-18156808,18157611-18157824,18158977-18159077,
            18159162-18159285,18159584-18159655,18159897-18159961,
            18160167-18160233,18160917-18161015,18161099-18161167,
            18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +2

Query: 230  PVRSKNLSKQNDIVRRRNDNVMDCRVLYIK-PIPKFWNAEKVKSFIQDKCKSRTIPENIK 406
            P+R     K  + +        D   +Y+K P     NAEK KS +QD  K R     ++
Sbjct: 856  PLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPADLIINAEKAKSIVQDIAKIRLDNALVQ 915

Query: 407  FVLLFIEDNGD 439
             V L  +   D
Sbjct: 916  AVALLRQKKKD 926


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,544
Number of Sequences: 37544
Number of extensions: 320685
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)