Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2377
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alph...    28   7.9  
U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alph...    28   7.9  
AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeri...    28   7.9  

>AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical
           protein F49D11.4 protein.
          Length = 416

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 215 SRSRSPVRSKNLSKQNDIVRRRNDNVMDCRVLYIKPIPKF----WNAEKVKSFIQDKCKS 382
           S  RS VR +NL++   +    N+N      L    IP F    W  +   +  ++    
Sbjct: 105 SVKRSQVRIQNLTRPTTVAPILNENKSSDSALPKIKIPTFNGERWEFDSFWTIFEELVHK 164

Query: 383 RTIPENIKFVLLFIEDNGDPSCLVK 457
           + +P+ +KF+ L     G+   LV+
Sbjct: 165 KELPDMVKFMHLINALQGEAKTLVR 189


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 242 KNLSKQNDIVRRRNDNVMDCRVLY 313
           KN   + DI+R   DNV  CRV Y
Sbjct: 44  KNEMSRIDIIREAADNVQSCRVCY 67


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 291 TLSLRRRTISFCLDRFLERTGERDRLRPYMTK 196
           T S  R+T+ +CL   + R GE+ R+ P+ TK
Sbjct: 772 TSSTVRKTVVYCLVAMVNRVGEQ-RMTPHFTK 802


>U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +2

Query: 314 IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 451
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 125 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 169


>U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform b protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +2

Query: 314 IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 451
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 165 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 209


>AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +2

Query: 314 IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 451
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 125 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,702
Number of Sequences: 27780
Number of extensions: 327014
Number of successful extensions: 851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)