Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2375
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    28   0.88 
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    27   1.5  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   2.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   6.2  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   8.2  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   8.2  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 577 TPSWRKGECAARRLSWVTPGFSQ 509
           T  WR G+ +  R++W  P F Q
Sbjct: 53  TSEWRAGDASLMRVAWAHPSFGQ 75


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 367 KSQSSETRAHSFPSSTLLSDPRGGARYPIRP 459
           +SQ  ETRAH+ PS    + P      P  P
Sbjct: 5   QSQEGETRAHAVPSQDATTTPDNANNVPKEP 35


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRGGARY 447
           R  AT++PRR P S  S     +  +S + S  RG  RY
Sbjct: 51  RPGATAVPRRSPTSPQSAYVPATVYTSPIGSPRRGSVRY 89


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 254 NITVCIISYYIISPLSKITLIIFI 183
           +I   I +YY++S  +KIT+ IF+
Sbjct: 411 SIFCTIAAYYLVSSSTKITVFIFL 434


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 86  LHSKYKIISINNKALNHYCVLL-EHY 160
           LH+K + +S+N+  +NH   LL EH+
Sbjct: 437 LHNKIQGLSLNHPKMNHLLELLKEHF 462


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 386 PGPIHFLPPHYFQILE 433
           P P+ FL PHYF +++
Sbjct: 94  PKPLKFLRPHYFTLVK 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,626
Number of Sequences: 5004
Number of extensions: 49347
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)