Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2375
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.2
08_02_0974 + 23200053-23200167,23200184-23200665 29 3.6
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453 29 3.6
05_04_0166 + 18664609-18664890 29 3.6
12_02_0635 - 21430245-21431156 28 4.8
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 28 4.8
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 28 6.3
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 28 6.3
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402... 27 8.4
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 27 8.4
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964... 27 8.4
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.4
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 472 ITIHWPSFYNVV-TGKTLALPNLIALQH 552
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>08_02_0974 + 23200053-23200167,23200184-23200665
Length = 198
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 328 DRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRGGARYPI 453
DR R S ++GPK +SS + ST + GAR+ +
Sbjct: 75 DRSRKRSRSQKGPKERSSRKKKSRRDGSTRKKEASEGARFAL 116
>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
Length = 494
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = -1
Query: 431 RGSESSVEEGNEWARVSELCDFGPRRGR-----DVARLRSIVLQLKQAGSRP 291
RG E+ +EWA + D GP D A + KQAG RP
Sbjct: 205 RGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQAGKRP 256
>05_04_0166 + 18664609-18664890
Length = 93
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 571 SWRKGECAARRLSWVTPGFSQSRRC 497
SWR+GE A W Q RRC
Sbjct: 31 SWRRGEAAVEERQWRCSAAHQRRRC 55
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 363 TPSRK--GCGTLTVNCASAQASWISPKLPITC 274
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 499 NVVTGKTLALPNLIALQHI-PLF 564
N +TG+ +ALP++I ++H+ P+F
Sbjct: 171 NPITGEQIALPSVITIEHVNPIF 193
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -2
Query: 421 KVVWRKEMNGPGFLSFVTLDPVEEGMWHAYG---QLCFSSSKLDLAQTTHH--VLLKWLE 257
+V+W+ PG L+F L + WH G S++D A H+ + WLE
Sbjct: 610 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 669
Query: 256 I 254
+
Sbjct: 670 L 670
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 373 VTLD-PVEEGMWHAYGQLCFSSSKLDLAQTTHHVLLKWLEITSQF 242
V LD P GM ++ + +++ L A H LLKW E+ +F
Sbjct: 136 VYLDSPAGVGMSYSLNKSDYTTGDLKTAADAHTFLLKWFELYPEF 180
>08_02_1200 +
25234208-25234370,25238527-25238819,25240003-25240243,
25240523-25240855,25240940-25241025,25241133-25242575
Length = 852
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 350 FLDGVQSHKAQKPGPIHFLPPHYFQILEGGPGTQFAL 460
F DGV+ +K G +H + P ++L PG + L
Sbjct: 299 FEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILL 335
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = -2
Query: 433 LEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYG---QLCFSSSKLDLAQTTHH--VLL 269
+ + +++W+ PG L+F L + WH G S++D A H+ +
Sbjct: 488 MNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIERSEIDNAAVIHYNGNMK 547
Query: 268 KWLEI 254
WLEI
Sbjct: 548 PWLEI 552
>04_04_1451 +
33695734-33695806,33695946-33696179,33696341-33696434,
33696532-33696749,33696859-33696992,33697098-33697325,
33697417-33697845
Length = 469
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 348 GCGTLTVNCASAQASWISPKLPITCY 271
GCG L ++ + AQ W++ + + C+
Sbjct: 40 GCGVLALSWSVAQLGWVAGPIAMVCF 65
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 484 WPSFYNVV-TGKTLALPNLIALQH 552
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,888
Number of Sequences: 37544
Number of extensions: 335560
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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