Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2375
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 254 NITVCIISYYIISPLSKITLIIFINIRQANIN 159
           ++TV ++  Y++  +  +TL + + I   N+N
Sbjct: 293 SLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVN 324


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 197 LIIFINIRQANINNVQAKH 141
           L++FI ++  ++ N+Q +H
Sbjct: 248 LLVFIGLQSLSLTNIQLEH 266


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 510 SHDVVKRRPVNCNTTHYRANWVPGP 436
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 248 TVCIISYYIISPLSKITLIIFINIRQANINNV 153
           T C     I+SP  ++T+ I+  I + ++N++
Sbjct: 270 TYCEPQVVIVSPTRELTIQIWQQIVKFSLNSI 301


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 346  SLPRRGPKSQSS 381
            SLPRRG  S+SS
Sbjct: 1837 SLPRRGRSSRSS 1848


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 346  SLPRRGPKSQSS 381
            SLPRRG  S+SS
Sbjct: 1833 SLPRRGRSSRSS 1844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,383
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)