Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2374
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 29 0.38
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.51
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 0.89
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 1.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.5
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 26 3.6
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.7
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 6.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.3
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 29.5 bits (63), Expect = 0.38
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 218 IPSSPSCYHQPTVPIHITEPSLR-LSLSISCQSKFIAPPSYQIYIL 84
+ +SP H P+ PI PS++ LS + Q + +A ++Q+ I+
Sbjct: 313 VTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDESVASSNFQVPII 358
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.51
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 235 NKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQ-ATKSIYYFSYKMHTG 59
N + + Y H H ISP ++S+ V++SP SR S H T + Y S +
Sbjct: 474 NSSFSPYYHKRHRQISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYEPSAPYYND 533
Query: 58 Y 56
Y
Sbjct: 534 Y 534
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 28.3 bits (60), Expect = 0.89
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -2
Query: 235 NKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKSIYYFSY 74
N T+ V+ + + +P++ +TS + F S YP +S SSS + A+ + SY
Sbjct: 120 NVTAPVWSNTSVPVSTPETSATSSSEFFTS-YPATSSESSSSYPASSTEVASSY 172
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -2
Query: 229 TSNVYRHHHHVIISPQSQSTS----LNPVFDSPYPFLASRSS 116
T N+ R H V+++PQ+ STS + P +PY A S+
Sbjct: 295 TDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETST 336
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -3
Query: 399 ILNFKKNENVIIHILKIIC*RA*KISLKSIMLFITN*SNLFNIYASLIKEEGAL*IKH 226
++ K E + ++ C R K+ LK ++ F+ + + Y + + GAL +KH
Sbjct: 800 VIGIKSFEKLQSYVFTYYCERYPKLILKRVLRFLEEIGFITSQYPRKLTDTGALFLKH 857
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -2
Query: 271 LCKFNQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKS 92
L N S++ +T V + HH ++ QSQS S V + + R+ H +
Sbjct: 233 LILMNNLATSLLAQTETVDKKHHETLM-KQSQSWSQKAVDSYYFAYPKDRNQECHAGCAA 291
Query: 91 IYY 83
+Y
Sbjct: 292 AFY 294
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 226 SNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKS 92
SNV +H HV +S S + VFD+ P S +H+ T S
Sbjct: 331 SNVKNNHSHVGSQTKSHSFATPSVFDNNKPV---SSDNHNNTTTS 372
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 190 SPQSQSTSLNPVFDSPYPFLASRSSSHHQATKSIY 86
S Q + SLN + + PY + SR H+A K Y
Sbjct: 355 SSQRSNVSLNSLIECPYKSMMSRKRP-HEAGKDSY 388
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 145 PYPFLASRSSSHHQATKSIYYFSYKMHTGY 56
P PF +RSS+ A S +Y +Y + Y
Sbjct: 349 PPPFFKNRSSAALLACSSFFYLNYMLFAYY 378
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 181 SQSTSLNPVFDSPYPFLASRSSSHH 107
S S P F PYP A +S+H
Sbjct: 425 SHSPQTQPPFQPPYPSKADEKNSYH 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,574
Number of Sequences: 5004
Number of extensions: 51427
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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