Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2374
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144...    29   3.7  
02_05_1062 - 33834305-33834694,33835190-33835333,33835466-338355...    28   6.4  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    27   8.5  

>07_03_0922 -
           22612773-22613321,22613616-22614189,22614389-22614466,
           22615455-22615504,22616215-22616448
          Length = 494

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 7   SSPSTKDYLFDILLMFNTLYAFYMRSSI 90
           ++ STK+ L DILL  N + AFY ++++
Sbjct: 339 ATSSTKELLRDILLFVNNVLAFYPKATL 366


>02_05_1062 -
           33834305-33834694,33835190-33835333,33835466-33835516,
           33836098-33836262,33836566-33836670,33836729-33836869
          Length = 331

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 520 NTVLCKDLNMTLQSLINQQT 579
           +T+  KDLNMT+Q LI Q+T
Sbjct: 35  STIPSKDLNMTIQELIVQKT 54


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 244 SVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKS 92
           S+    + +Y H+  +     S   SL P+  S YPF A+  +  HQ   S
Sbjct: 168 SIFGDYNVIYVHYPGLPSLVPSVPGSLGPISSSQYPFSANVHNRRHQKINS 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,808
Number of Sequences: 37544
Number of extensions: 265807
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)