Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2373
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   204   4e-53
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   5.6  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  204 bits (498), Expect = 4e-53
 Identities = 92/176 (52%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
 Frame = +3

Query: 9   KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 185
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 186 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 365
           I+              N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 366 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 533
           A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F   R +T+F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 126 WRQLDPERKFSFY--TREAWARSPTGAYGR 43
           W+ L PE+ F+F+  T EAW +  T    R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 126 WRQLDPERKFSFY--TREAWARSPTGAYGR 43
           W+ L PE+ F+F+  T EAW +  T    R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 356 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 484
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 356 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 484
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 353 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 484
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 355 TEPELTQYRSSKWK*SRLLRVAVHRSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTS 534
           T P  T++  S     R +   V  + SSTT+ + +    + TTT   +PS T  + + S
Sbjct: 534 TSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSSTTTKPTTLSTTTTTQVPSTTTSVTVPS 593

Query: 535 CNWNVPS 555
                PS
Sbjct: 594 TQKATPS 600


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 563 LLCDGTFQLQEVSARPLVREGIKSLVV 483
           LL DG+F  QE++ RP++ E   S+ V
Sbjct: 28  LLDDGSFSSQELALRPVMPESTPSVAV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,894
Number of Sequences: 27780
Number of extensions: 295061
Number of successful extensions: 844
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)