Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2372
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    38   0.001
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.43 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.43 
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    28   1.00 
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    27   2.3  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.3  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   5.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.0  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.3  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 12/143 (8%)
 Frame = +3

Query: 120 GFCKKPGECTCKFGYYGDRCEKCIPLLGCVHGR-CNEPFQCICNDGWDGLF--CTEPTCS 290
           G  +   EC C     G+ CE       C  G+ C      +C+D  D     C      
Sbjct: 321 GIVEDGEECDC-----GEDCENN----PCCDGKTCKLTKGSLCDDQQDACCYQCHFKNAG 371

Query: 291 TECHKIRGFCESPGEC-----RCRF--GWS-GPTCHACQTLPGCQHGYCEKPL-ECRCLP 443
           T C +    C+ P  C     +C     W  G  C     +  C  G C     +C+ L 
Sbjct: 372 TLCRQSTNPCDKPEFCTGISSKCPVDENWDDGRICQDSLGMGSCASGVCTSASRQCKKLT 431

Query: 444 GYTGMLCQTPICAANCHSERGFC 512
            ++ + C +  C  +C +E G C
Sbjct: 432 NFSSLSCHSDSCKVSCQNEDGTC 454


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 174 RC-EKCIPLLGCVHGRCNEPFQCICNDGWDGLFCTEPTCSTECHKIRGFCESPGECRCRF 350
           RC E C  LL C    C +    +C+   DG  C E +C  EC K R +CE   +  C  
Sbjct: 697 RCGELCNKLLSCKTHFCEK----LCHP--DGE-C-ESSCKKECGKRRMYCEHVCQSPCHA 748

Query: 351 GWSGPTCHAC-QTLPGCQHGYCEKPLECRC 437
           G      H C + +P      C+ PLE  C
Sbjct: 749 G------HPCDERIP------CKAPLEVSC 766



 Score = 29.1 bits (62), Expect = 0.57
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 372 HACQTLPGCQ-HGYCEKPL--ECRCLPGYTGMLCQTPICAANCHSERGFCRRPGECRCKV 542
           H C+ L  C   G CE     EC     Y   +CQ+P  A +   ER  C+ P E  C+ 
Sbjct: 711 HFCEKL--CHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCEC 768

Query: 543 G 545
           G
Sbjct: 769 G 769



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 93  CRKGCDPIRGFCKKPGECTCKFGYYGDRCEKC-IPL-LGCVHGRCNEPFQC 239
           C+K C   R +C+   +  C  G+  D    C  PL + C  GR  +   C
Sbjct: 727 CKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKKVTC 777


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = +1

Query: 22   TYATTKASPSACRDGRGTSAMCPYAGRDAILLEAFARNQGSVHASSGTTETDARSVSRCW 201
            T + T  S ++  +G  +S +   A    +  +A A    +V +S+  + + + + +   
Sbjct: 1092 TSSVTAVSSTSSVEGTASSTIAAAASAATLSSDA-ASGSSTVTSSATASSSSSAATTADS 1150

Query: 202  AASTAAATNRFNVSVTTAGTAY 267
            + +T   +N FN +V TAG  Y
Sbjct: 1151 SVTTDTPSNDFNANVDTAGLWY 1172


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 67  RGTSAMCPYAGRDAILLEAFARNQGSVHASSGTTETDARSVSRCWAASTAAAT 225
           + T+  CP++  D+++       QGSV   S T+  D  S     + S  +AT
Sbjct: 321 KATNFTCPWSNDDSVIKGDDFTCQGSVATISATSSYDLSSTVSATSGSATSAT 373


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +2

Query: 305 DPRLLRVPGRVSLPVRL--VRADMSRLSNFTRMPARLL*EAIRVQMSTRLHGNAVSDANL 478
           DP LLR PGR+   +     R    R   F  + A++L     V + T +     S    
Sbjct: 287 DPALLR-PGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSP-EVDLDTFIMRPDASSGAQ 344

Query: 479 CSELSQ*ERLLSA--SRGMSLQGRLDRAHVRAV 571
            + + Q   LL+   SRG+ LQ  ++ A+ RAV
Sbjct: 345 IAAIMQDAGLLAVRKSRGVILQSDIEEAYARAV 377


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 558 WAR-SSRPCSDIPRDADRSLSHCDSSLHKLASDTAFPCSRVDICTLM 421
           WA  S   CS+        L++C SSL   AS T     R+D  +L+
Sbjct: 67  WAAFSEASCSERKLALQGILNNCSSSLLSFASSTLDSLVRLDFLSLL 113


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 179  REVYPAAGLRPRPLQRT-VSMYL*RRLGRPILYRAYMQHGMSQDPRLLRVPGRVSLPVRL 355
            +E+Y A G+   PL +  +  +  +      +  A  Q+ +S DP L   P   ++P+R 
Sbjct: 834  KEMYGADGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVPIRD 893

Query: 356  VR 361
            +R
Sbjct: 894  MR 895


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = +3

Query: 162 YYGDRCEKC-----IPLLGCVHGRCNEPFQCICNDG 254
           YY D  + C     +  L C +G C  P Q +C+DG
Sbjct: 891 YYCDNDQLCPIIDGVDYLSC-NGACYNPSQYVCSDG 925


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 123 FCKKPGECTCKFGYYGDRCEKCI 191
           FC+K  E  C   ++  +C KCI
Sbjct: 98  FCEKCQEYKCDRSHHCSQCNKCI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,123
Number of Sequences: 5004
Number of extensions: 64971
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)