Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2371
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491...    29   3.6  
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819...    29   4.7  
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990...    28   8.3  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   8.3  

>08_02_1497 -
           27548328-27548534,27548876-27548978,27549074-27549153,
           27549245-27549327,27549899-27549947,27550028-27550093,
           27550254-27550303,27550762-27550886,27551842-27551954
          Length = 291

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 83  EEFSYRGNAGTIILINVYDPLSCKFPQIAH 172
           EE+++  NAG  I I++ +P+  K P+I +
Sbjct: 62  EEYTHGSNAGLKIAIDLLEPIKAKSPKITY 91


>04_01_0623 -
           8198301-8198504,8198805-8198907,8199065-8199144,
           8199239-8199321,8199593-8199641,8199736-8199801,
           8200118-8200167,8200299-8200423,8200568-8200683
          Length = 291

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 83  EEFSYRGNAGTIILINVYDPLSCKFPQIAH 172
           +E+S+  NAG  I I++ +P+  K P+I +
Sbjct: 63  QEYSHAANAGIKIAIDLLEPMKQKHPKITY 92


>09_06_0106 -
           20898480-20898680,20898762-20898864,20898953-20899047,
           20899113-20899135,20899725-20899799,20900219-20900267,
           20900349-20900414,20901257-20901306,20901688-20901812,
           20903488-20903600
          Length = 299

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 83  EEFSYRGNAGTIILINVYDPLSCKFPQIAH 172
           EE+++  NAG  I I++ +P+  K P I +
Sbjct: 62  EEYTHGSNAGLKIAIDLLEPIKRKHPNITY 91


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 320 SHPC*VAPMA*LLIRF*CSK--LDHQYHISQHLHYAK*MYVDNV*VPDMLQHAQFVGI 153
           SH   V  +   LI   CSK  L H + +  HL Y    Y+D++ +P+ + H +F+ +
Sbjct: 224 SHVIRVLALQNCLILDHCSKHSLQHVWSLL-HLRYLGLQYIDSIEIPEDVGHLKFLQV 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,587
Number of Sequences: 37544
Number of extensions: 279617
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)