Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2371
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementin... 36 0.19
S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subuni... 36 0.19
M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protei... 36 0.19
J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein. 36 0.19
J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein. 36 0.19
CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein. 36 0.19
BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complement... 36 0.19
BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complement... 36 0.19
BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complement... 36 0.19
BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complement... 36 0.19
BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein. 36 0.19
AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70k... 36 0.19
BC010235-1|AAH10235.1| 352|Homo sapiens polycomb group ring fin... 31 5.3
AL591408-3|CAI16745.1| 350|Homo sapiens polycomb group ring fin... 31 5.3
AB047006-1|BAB40779.1| 352|Homo sapiens hMBLR protein. 31 5.3
BT007074-1|AAP35737.1| 206|Homo sapiens glycoprotein (transmemb... 30 7.0
BC011595-1|AAH11595.1| 206|Homo sapiens GPNMB protein protein. 30 7.0
AJ505015-1|CAD43718.1| 206|Homo sapiens glycoprotein nmb-like p... 30 7.0
AC005082-2|AAP22337.1| 206|Homo sapiens unknown protein. 30 7.0
>Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subunit
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protein
subunit mRNA, complete cds. ).
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSTKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70kDa
(Ku antigen) protein.
Length = 609
Score = 35.5 bits (78), Expect = 0.19
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 377 LSDALWYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIV--ELNNSEIILKL 550
LS+ LW C +F+ +S + I+L + D P ++ + R +L ++ I L L
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 202
Query: 551 INL-SDSEYEIHQFYKDLL 604
++L ++I FY+D++
Sbjct: 203 MHLKKPGGFDISLFYRDII 221
>BC010235-1|AAH10235.1| 352|Homo sapiens polycomb group ring finger
6 protein.
Length = 352
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 497 PTFDRIVELNNSEIILKL-INLSDSEY-EIHQFYKDLLFEVNKNSLPKSVLEN*RCSKVI 670
P ++ ++ +I+ KL INL + E ++H FYK+ EV K ++P+ V + SK +
Sbjct: 183 PLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRSKKV 242
Query: 671 L 673
L
Sbjct: 243 L 243
>AL591408-3|CAI16745.1| 350|Homo sapiens polycomb group ring finger
6 protein.
Length = 350
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 497 PTFDRIVELNNSEIILKL-INLSDSEY-EIHQFYKDLLFEVNKNSLPKSVLEN*RCSKVI 670
P ++ ++ +I+ KL INL + E ++H FYK+ EV K ++P+ V + SK +
Sbjct: 181 PLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRSKKV 240
Query: 671 L 673
L
Sbjct: 241 L 241
>AB047006-1|BAB40779.1| 352|Homo sapiens hMBLR protein.
Length = 352
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 497 PTFDRIVELNNSEIILKL-INLSDSEY-EIHQFYKDLLFEVNKNSLPKSVLEN*RCSKVI 670
P ++ ++ +I+ KL INL + E ++H FYK+ EV K ++P+ V + SK +
Sbjct: 183 PLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRSKKV 242
Query: 671 L 673
L
Sbjct: 243 L 243
>BT007074-1|AAP35737.1| 206|Homo sapiens glycoprotein
(transmembrane) nmb protein.
Length = 206
Score = 30.3 bits (65), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 313 HVRWRQWHNF*YVFNVRSWIINT 245
H WR+W NF YVF+ W++ T
Sbjct: 165 HPGWRRW-NFIYVFHTLGWLLQT 186
>BC011595-1|AAH11595.1| 206|Homo sapiens GPNMB protein protein.
Length = 206
Score = 30.3 bits (65), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 313 HVRWRQWHNF*YVFNVRSWIINT 245
H WR+W NF YVF+ W++ T
Sbjct: 165 HPGWRRW-NFIYVFHTLGWLLQT 186
>AJ505015-1|CAD43718.1| 206|Homo sapiens glycoprotein nmb-like
protein protein.
Length = 206
Score = 30.3 bits (65), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 313 HVRWRQWHNF*YVFNVRSWIINT 245
H WR+W NF YVF+ W++ T
Sbjct: 165 HPGWRRW-NFIYVFHTLDWLLQT 186
>AC005082-2|AAP22337.1| 206|Homo sapiens unknown protein.
Length = 206
Score = 30.3 bits (65), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 313 HVRWRQWHNF*YVFNVRSWIINT 245
H WR+W NF YVF+ W++ T
Sbjct: 165 HPGWRRW-NFIYVFHTLGWLLQT 186
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,703,076
Number of Sequences: 237096
Number of extensions: 1613019
Number of successful extensions: 2801
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2801
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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