Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2370
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    30   0.22 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.7  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   3.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   3.6  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.8  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   4.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   6.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   8.3  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   8.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 408 LDVGTYGYDNVTNVCPYTLNVFDLNTD--QIIRKYVLRPERHWLYDFSLATSLSISGPAV 581
           L+ G +G D V  VCP+  N+F +  D    I KY+ +  +H  Y  +  T L I+ P V
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIFYVLKDVPWSITKYLPQALQHSGYLIAEDT-LQINTPQV 509


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +1

Query: 4   LSK*NGSEVFSFLWASLTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTA 183
           LSK NG +V     A  TSIS D A  N+ V R R++     L    ++ +  D  E TA
Sbjct: 44  LSKINGVDVSLIYPALETSISKDSADLNLPVPRLRVKGKPQELAQKWAEAFPKDLVEVTA 103


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 DNVTNVCPYTLNVFDLNTDQIIRK 503
           +++T VCP       +NT+QI+RK
Sbjct: 110 EHITGVCPILTADMLVNTEQIVRK 133


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 104 VDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFVSRS 229
           + WN P QF  +Q L     L P   L + +ER  R K+FV  S
Sbjct: 76  IQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFVFMS 117


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 168 QRTHCPLVSKGGGTNCSSAVPRWRSGIPATLNYIPLDAPYEPSP 299
           Q TH P  S G G + +    R  S  P + NY P  +  +PSP
Sbjct: 282 QPTHNPTSSYGNGASTNYNASRPPSNHPHSSNY-PSSSRRKPSP 324


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 159 APVL--RACCFENWSG*FQSTAFHENISWS 76
           APVL  + C + N++G  Q+     N+SWS
Sbjct: 19  APVLSYKKCSYRNFNGLLQARFQSNNLSWS 48


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 438 VTNVCPYTLNVFDLNTDQIIRKYV 509
           +TN+ P+T  ++DL  ++I+R+Y+
Sbjct: 399 LTNLEPHTTFLWDLEENRIVRQYM 422


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 19  GSEVFSFLWASLTSISNDKAPRNIL 93
           G +V SFL  SLT  + D   R IL
Sbjct: 255 GGQVISFLTESLTKYAGDPVARKIL 279


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 431 VSISANV*YPKTITLVCFDPVYSSQ 357
           +S+S+ + YP++ TL    P+Y S+
Sbjct: 288 LSLSSQILYPESTTLSEISPIYDSE 312


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 285 YEPSPKLTPYPSFEGN 332
           Y+P+PKLTP+ SF  N
Sbjct: 221 YKPNPKLTPF-SFNNN 235


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 511 YDQKDIGSTTFHWQHRSRYPGQL*GHLL 594
           YD++DI S ++H      YP +   +LL
Sbjct: 183 YDEEDISSFSYHMSFLQNYPIEKLNYLL 210


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 364 LYTGSKQTSVIVFGY*TLALMDTTTLQMCARTRSM-YLT*TLIKSSVNTCYDQKDIGSTT 540
           L TG    ++++F    L L+   T+  C   R   ++    I + V       +IGSTT
Sbjct: 251 LPTGGLSLALLIF---FLNLVPKPTVSFCVFLRDFDFVGIVTITTGVVLFLLGLNIGSTT 307

Query: 541 FHWQH 555
            HW H
Sbjct: 308 GHWAH 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,681
Number of Sequences: 5004
Number of extensions: 53848
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)