Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2370
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 33 0.23
01_01_0596 + 4435643-4436664,4437241-4437766 33 0.23
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.92
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 30 1.2
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 29 2.8
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 28 4.9
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 4.9
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 27 8.5
03_06_0757 - 36042502-36043316,36045105-36045387 27 8.5
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384... 27 8.5
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 27 8.5
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 321 FEGNELGNCQTGLTTVYRVKADQCDR---LWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 491
F EL + Q L V +V+ DQ D+ +W DV YD N+ + L++ D+ ++
Sbjct: 35 FLKTELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 276 DAPY--EPSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDR--LWVLDVGTYGYDNVT 443
DAP +P L YP G ++ + RVK D+ +W+LD GT+ ++ V
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264
Query: 444 NVCPYTLNV 470
N+ + L V
Sbjct: 265 NIGDFALFV 273
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 318 SFEGNELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDL 479
+F +EL + Q + + +V DQ D ++W DV YD NV + L V DL
Sbjct: 27 TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 228 ERLTNNLFLHLSIPTGSAFSGIRAPVLRACCFE---NWSG*FQSTAFHENISW 79
E+L + LFL+L I S + PV ACC E W G S +E W
Sbjct: 171 EKLKSILFLYLIIEMSSENVQLMLPVFSACCEELISRWMGSIGSDGSYEVDCW 223
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 333 ELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNV 470
EL + Q L V +V DQ D ++W D+ YD N+ + L V
Sbjct: 48 ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRV 96
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 192 SKGGGTNCSSAVPRWRS-GIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTGLTTV 368
SK GG N S + R R+ + + + + P P+P P + N LG G TT
Sbjct: 709 SKRGGRNGSQSRGRRRARSVAIAVEEVEVSPPPAPAPPPPPPADLDANALGITGWGRTT- 767
Query: 369 YRVKADQC 392
R + +C
Sbjct: 768 RRCRRPRC 775
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 130 LEAAGSQDWCSDTRERTARWYRKVEEQI 213
+E S+ CS+T E+ RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 89 FSWNAVDWNYPDQFSKQQALRTGALIPEN 175
F W + +W + Q +K+ + TG L+ E+
Sbjct: 547 FDWRSSNWTFSKQAAKELSAATGVLLGED 575
>03_06_0757 - 36042502-36043316,36045105-36045387
Length = 365
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 414 VGTYGYDNVTNVCPYTLNVFDLNTDQIIRKYVLRPERHWLYDFSLATSLSISGPA 578
VG G + + L V TD I Y P R YD L +SG A
Sbjct: 158 VGVVGEEETARIIDGALFVVCAGTDDIANTYFTTPFRSVEYDIPSYVDLLVSGAA 212
>03_01_0512 -
3849275-3849333,3849429-3849531,3849610-3849654,
3849876-3849974,3850078-3850146,3850251-3850310,
3850540-3850633,3850875-3850949,3851101-3851219,
3851433-3851600,3852743-3852928
Length = 358
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 405 VLDVGTYGYDNVTNVCPYTLNVFDLNTDQIIRKYVLRPER-HWLYDFSLATSLSISGPAV 581
+LDV GYDN+ Y+ + D Q+ +YVL + +D+ +I+ A
Sbjct: 151 LLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQYPDFNIASDAF 210
Query: 582 RT 587
+T
Sbjct: 211 KT 212
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 104 VDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 211
VD DQ K +R I E+ P G ++WRNK
Sbjct: 147 VDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,538
Number of Sequences: 37544
Number of extensions: 363812
Number of successful extensions: 1060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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