Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2370
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 240 SGIPATLNYIPLDAPYEPSPKLTPYPSFEG 329
           S    T +  PLD P++PS KL+  P  +G
Sbjct: 126 SSSSGTFSPPPLDPPFDPSSKLSALPDIDG 155


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 351 TGLTTVYRVKADQCDRLWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQII 497
           T L   + V+  + D +W +  G YGY+N T+     +   D   DQ++
Sbjct: 456 THLKNTWNVRIYEGDDVWAVLWGVYGYNNTTSTT--CVQTHDSARDQVM 502


>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 408 LDVGTYGYDNVTNVCP----YTLNVFDLNTDQIIRKYVLRP 518
           LD  T   D + N CP    +T +VF + TD+ +  Y+L P
Sbjct: 173 LDQDTAKLDALKNYCPTREFFTTSVFIVLTDKTLMSYILIP 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,353
Number of Sequences: 27780
Number of extensions: 307102
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)