Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2369
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    29   3.1  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    29   4.1  
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    27   9.4  
02_01_0048 + 343154-343580,343956-344827,345830-346519                 27   9.4  

>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 528 GVKLIAVHCMDTWNL----YRLLADPADFVVPQSINKDKLKTN 412
           GV   A H ++T  +    Y+    P++FVVP+ + K+ LK N
Sbjct: 288 GVLATAWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKESLKRN 330


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 364 QFSFSLDVSPVGRIPFVCFKFIFIYGLRHYEVCRV 468
           +FS S D      IP  C    F++ L+HY   RV
Sbjct: 182 EFSLSKDHREYAVIPITCVILAFLFALQHYGTHRV 216


>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 170 VKLFYGLIFRKMIYMQLSRNWLNKVKLDKV*TKGFYY 60
           +  F G +FR+ ++  L + W  ++ L K+ +KG ++
Sbjct: 193 IPYFIGSLFRERLHEWLEKKWPREIALVKLASKGSWF 229


>02_01_0048 + 343154-343580,343956-344827,345830-346519
          Length = 662

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 143 RKMIYMQLSRNWLNKVKLDKV*TKGFYYHRHEYKKDGA 30
           R   + Q  RNW+N      V  KG+Y+  ++Y  DGA
Sbjct: 126 RTGFHFQPERNWMNDPN-GPVYYKGWYHLFYQYNPDGA 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,131
Number of Sequences: 37544
Number of extensions: 284061
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)