Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2368
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.034
01_06_0740 + 31603996-31604820,31605080-31605391 31 0.97
03_06_0546 - 34646946-34647289,34647542-34647608 30 1.7
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 2.2
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 3.0
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 3.0
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 29 3.0
05_03_0090 - 8330283-8330831 29 3.0
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 29 3.9
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 6.8
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 27 9.0
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 9.0
05_01_0242 + 1804183-1806096 27 9.0
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 27 9.0
01_01_0088 + 688792-691441,691629-693013 27 9.0
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +2
Query: 386 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI 532
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = -3
Query: 555 GAAFFFDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHGP 385
GAAF D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 177 GAAFN-DAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 186 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 275
SFH E+ CC CCV+ C + C + HL
Sbjct: 79 SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 186 SFHQEE--VCCTCCVYRSCIILCYFSRR 263
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 301 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 453
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 454 GATTYTTPFVQTVPIASTASL 516
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 407 LAPTSLPTPTSQVALLEPLPTRHPSCRPCR-SHRLHHFPSQLI*SKKKAA 553
L P + P+PT + LL PL S P + S+R PS+ KKKAA
Sbjct: 29 LLPAAAPSPTRRRRLLAPLAAASNSGSPSKDSNRSPPPPSKKKKKKKKAA 78
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +1
Query: 322 IPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIA 501
+PL++ + R+PQ P + A Y+ P + + P A + T P +
Sbjct: 11 LPLLACADEVPDRYAVLRAPQGPGASAAAKEYLDPTFPLPAPPPAAPSCTVPVLSYSFGD 70
Query: 502 STASLPVAAHLIKKEGCP 555
+ + P A GCP
Sbjct: 71 TYGAAPAKASYAPPAGCP 88
>05_03_0090 - 8330283-8330831
Length = 182
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 419 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHH 514
SLPTP L PLP RH P+ CR L H
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSH 119
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 364 IKKRSP-QWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHLIK 540
+K+R+ + VS Y + A+ LG P+ Q V I T + + +K
Sbjct: 543 VKRRTKTEKTVSLQVLRQYFAGSLKDAAKSLGGQPSHAPYSQNVSIVITLFFRDSCYCMK 602
Query: 541 KEGCPRAGDNLHRTYYLHRWFSK 609
+ CP + R + ++RW S+
Sbjct: 603 VQVCPTTLKRICRQHGINRWPSR 625
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 376 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 483
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 358 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 477
+F+ + SPQ P AP + Y + P G T+Y +P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 380 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPS 481
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 440 QVALLEPLPTRHPSCRPCRSHR 505
++ LL PLP RH S P SHR
Sbjct: 7 RLRLLLPLPRRHLSTAPATSHR 28
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 447 PSW--SHYLH-DTLRADRADRIDCIT 515
PSW S+ +H DTL D +R+DCI+
Sbjct: 1311 PSWLGSNIIHLDTLHLDGLERLDCIS 1336
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 447 PSW--SHYLH-DTLRADRADRIDCIT 515
PSW S+ +H DTL D +R+DCI+
Sbjct: 867 PSWLGSNIIHLDTLHLDGLERLDCIS 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,077
Number of Sequences: 37544
Number of extensions: 345179
Number of successful extensions: 1252
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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