Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2368
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF194964-1|AAF28314.1| 632|Caenorhabditis elegans polo-like kin... 30 1.5
AC024201-9|AAF36014.1| 632|Caenorhabditis elegans Polo kinase p... 30 1.5
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 2.7
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 2.7
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 2.7
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 28 6.1
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF016428-3|AAO26000.3| 445|Caenorhabditis elegans Ground-like (... 27 8.1
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 397 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 519
+I PSS I N + P YTT T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335
>AF194964-1|AAF28314.1| 632|Caenorhabditis elegans polo-like kinase
2 protein.
Length = 632
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 413 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 502
PTS SQ+ LL+P+P+R P+ R CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285
>AC024201-9|AAF36014.1| 632|Caenorhabditis elegans Polo kinase
protein 2 protein.
Length = 632
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 413 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 502
PTS SQ+ LL+P+P+R P+ R CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 395 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 481
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 395 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 481
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 395 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 481
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 395 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 481
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 361 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTAS 513
F+K + P ++ P + P T + + A T T P T P+++T +
Sbjct: 7 FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTT 54
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 424 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVA 525
P T + P ATT T PFVQT P A+ A+LP A
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPA 147
>AF016428-3|AAO26000.3| 445|Caenorhabditis elegans Ground-like (grd
related) protein18 protein.
Length = 445
Score = 27.5 bits (58), Expect = 8.1
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 TYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPN-TYIASG 447
+Y + PL S+SY+++IP Q +Y + P P + +Y TP+ T+I
Sbjct: 75 SYQNQQPLQPSSSYLANIPPFMQ--SYPQPPLFTTPPPLPQDN-SILNYPTPSQTFIPQQ 131
Query: 448 PLGATTYTTPFVQTVPIASTA 510
L T+Y+T F P A +A
Sbjct: 132 TL-KTSYSTSFGSLGPPAPSA 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,341
Number of Sequences: 27780
Number of extensions: 264594
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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