Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2367
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   203   2e-53
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    91   1e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    82   6e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    81   1e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    69   8e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    52   8e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   7e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    43   5e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    40   4e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.4  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    27   3.2  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    27   3.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.6  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   7.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  203 bits (495), Expect = 2e-53
 Identities = 98/131 (74%), Positives = 107/131 (81%)
 Frame = -1

Query: 664 KVITIETKRFPLPRGFSSNPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTT 485
           +VITI  +RF  P      PS LG+   GIHE TYNSIMKCDV+IRKDLY    +   TT
Sbjct: 246 QVITIGNERFRAPEALFQ-PSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTT 304

Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
           MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364

Query: 304 SGPSIVHRKCF 272
           SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 45/131 (34%), Positives = 79/131 (60%)
 Frame = -1

Query: 664 KVITIETKRFPLPRGFSSNPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTT 485
           + IT+ T+ F  P     NP  +G  A G+H   + SI+  D+++R  LY+   +   +T
Sbjct: 251 QTITLGTECFSAPEVLF-NPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGST 309

Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
           +  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY +
Sbjct: 310 LLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-K 368

Query: 304 SGPSIVHRKCF 272
           +  +++ R+ F
Sbjct: 369 NDQNVIFRRRF 379


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -1

Query: 580 GIHETTYNSIMKCDVNIRKDLYAKHRIVRWTTMYPGIADRMQKEITALAP-STMKIKIIA 404
           G+HE  Y SI+ CD  +R  L     +   T++ PG+++R+Q E+  LA  S + +    
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382

Query: 403 PPER-KYSVWIGGSILASLSTFQQMWISKQEYDESG 299
                  +VW GGSILASL  FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 6/108 (5%)
 Frame = -1

Query: 580 GIHETTYNSIMKCDVNIRKDLYAKHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIAP 401
           GI +   N I +CDV+IR  L     +   T++  G + R+Q E++ L P + ++KI A 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384

Query: 400 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 275
               ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
 Frame = -1

Query: 664 KVITIETKRFPLPRGFSSNPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTT 485
           +VI + ++R+  P      P  +G    G+ E  +++I   DV+IRK LY    +   ++
Sbjct: 246 RVIKVGSERYECPECLFQ-PHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304

Query: 484 MYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTF 341
           MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++LA  ++  
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364

Query: 340 QQMWISKQEYDESG 299
             MW+SK E++E G
Sbjct: 365 DHMWVSKAEWEEYG 378


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 34/129 (26%), Positives = 59/129 (45%)
 Frame = -1

Query: 664 KVITIETKRFPLPRGFSSNPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTT 485
           +V+ +  +RF +P    S PS + +   GI E    S+     NI+  L      +    
Sbjct: 272 QVLNLSNERFMIPELLFS-PSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330

Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
            +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +    I++ EY E
Sbjct: 331 KFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSE 389

Query: 304 SGPSIVHRK 278
            G +I+ RK
Sbjct: 390 HGANIMTRK 398


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 24/108 (22%), Positives = 49/108 (45%)
 Frame = -1

Query: 610 NPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTTMYPGIADRMQKEITALAP 431
           +PS +G+   GI E   + + +  +  ++ L +   I       PG+  R+++E+T++ P
Sbjct: 604 SPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMP 663

Query: 430 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 287
               I +          W G S  +    F+   ++++EY E GP  +
Sbjct: 664 VGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
 Frame = -1

Query: 658 ITIETKRFPLPRGFSSNPSFLGMXACGIHETTYNSIMKCDVNIRKDLYAKHRIVRWTTMY 479
           I +  +RF  P  F +           + E   N +    +++RK LY    +   +T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339

Query: 478 PGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGSILASLSTF 341
               +R+Q+++  +    +               + +I+   ++ +VW GGS+LA    F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399

Query: 340 QQMWISKQEYDESGPSIVHR 281
                +K +Y+E G SI  R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
 Frame = -1

Query: 544 CDVNIR----KDLYAKHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKY 386
           CD N+     K+LY+   IV     +PG A  +++ I +   +   I +I PP   + ++
Sbjct: 517 CDGNLSDEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQF 576

Query: 385 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 278
             W G  I   +    ++WI   ++   G  ++  K
Sbjct: 577 VAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 379 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 278
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 504 RCLAYKSLRMFTSHFMMELYVVSWMPQAXIPKNE 605
           RC   K+L  F   FM  LYV S++ Q  I KN+
Sbjct: 123 RCQELKALCFFL-WFMFGLYVASFIVQIFIAKND 155


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 634 PLPRGFSSNPSFLGMXACGIHETTYNSIMK 545
           P P  FS     LG+ + G+H   Y+ + K
Sbjct: 602 PKPESFSKGDILLGLASDGVHSNGYSLVRK 631


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 387 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 292
           TP  +     PPS+PS+R   R  S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 454 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 344
           KEI++ A S + +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 479 VHGG--PPDNTVFGVQVLTDVHVALHDGVICGLVDAASXHTQERGVGRKASG 628
           +HGG  P  +T+  V++L  V    H+G IC L+ +        G+  + +G
Sbjct: 166 LHGGLSPSIDTLDHVRILDRVQEVPHEGPICDLLWSDPDDRPGWGISPRGAG 217


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 320 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 406
           F   HLL   + G+D + + YG L  W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,622
Number of Sequences: 5004
Number of extensions: 57809
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)