Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2366
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 31 0.17
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.70
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 28 0.93
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 2.8
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 4.9
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar... 26 4.9
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.5
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 25 8.6
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.6
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 25 8.6
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 30.7 bits (66), Expect = 0.17
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -3
Query: 257 FSHSVECFCCITLITFLTLAFCFSVHFPQLVAMVSGKAFLKSEASGV--HRPLSRNQFI* 84
F H + F C+ FL F F +HF L G +F+ E P++ N I
Sbjct: 280 FQHFLARFFCLIFFPFLFFLFWFYMHFNILTISGPGDSFMSLEFQETLSDNPITANSTI- 338
Query: 83 AFNNLSLVTI 54
N +VTI
Sbjct: 339 -LNYYDIVTI 347
>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 69
Score = 28.7 bits (61), Expect = 0.70
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 336 NKYLAS*KEFVEIST-VFSRRIMFLHKFFPFCGMF 235
NK+ +S F +S+ + +R+ FLH F P C F
Sbjct: 32 NKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSF 66
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 191 FSVHFPQLVAMVSGKAFLKSEASGVHRPLSRNQFI*AFNNLS 66
+ + FP M K FL A HR + R+Q + FN +S
Sbjct: 266 YGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 413 FLHVLRCSLFHNWFWYS*IKFKQIC 487
F+ V +LF NW W + F QIC
Sbjct: 497 FVLVASLTLFVNWCWVVVLAFTQIC 521
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 10 LAADLSKYENFDVEPIVTSDRLLK 81
LA LSKYENFD + + L K
Sbjct: 327 LAVALSKYENFDADKLFQQMNLAK 350
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 70 RLLKAYINWFLDKGRCTPEASDFKKALPDTIATNCGKCTEKQK 198
R + YIN F D R + D+ K + + +C EK K
Sbjct: 307 RRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349
>SPAC630.11 |vps55||vacuolar sorting protein Vps55
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 404 IGHFLHVLRCSLFHNWF 454
+G L +L C+LF NW+
Sbjct: 16 VGFMLVILSCALFKNWY 32
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 118 TPEASDFKKALPDTIATNCGKCT--EKQKANVRKVIKVIQQKHST 246
+P S F +A IATNC T E + N+ V+ + K +T
Sbjct: 604 SPYVSSFAEACIQAIATNCNYSTPAELLRENIDYVVNSVALKLNT 648
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 28 KYENFDVEPIVTSDRLLKAYINWFLDKGRCTPEASDFKKALPDTIATNCGKCTEK 192
K E D+E +V R + I W L + + +K LPD T K ++K
Sbjct: 204 KIEKPDIENVVIQQRSWTSPIRWQLWGSVPSTPVNTVRKTLPDGQVTFVAKPSKK 258
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 259 LVKKHDPSGKHRADFDKFL 315
++KK DPSG R D+FL
Sbjct: 82 VLKKCDPSGNRRITLDEFL 100
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 300 FRQIPSRKLNIY**VILV*ATLMWGCIG 383
F+++PS +N+ + LV T++ GC G
Sbjct: 365 FKEVPSGDINLESAIALVKPTILLGCSG 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,932
Number of Sequences: 5004
Number of extensions: 49679
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -