Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2366
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1326 - 26158279-26159712                                         33   0.24 
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804...    29   2.9  
07_03_0476 - 18547223-18548187,18548743-18549958                       29   3.8  
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697...    28   5.1  
02_05_0875 + 32393496-32393881,32395297-32395397,32395493-323956...    27   8.9  
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007...    27   8.9  

>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -3

Query: 224 TLITFLTLAFCFSVHFPQLVAMVSGKAFLKSEASGVHRPLSRNQFI*AFNNLSLVTIGST 45
           T++  L L   F+VH+P L++     +   + A+G HR  SR+       + + V  G  
Sbjct: 46  TILATLCLVCLFTVHYPSLLSHSFHLSSAAAAANGKHRAASRSSHRSLLGSSAAVAYGGA 105

Query: 44  SKFSYFERSAA 12
           +      RSAA
Sbjct: 106 AWEKEVRRSAA 116


>04_04_1111 -
           30979334-30979479,30979769-30979866,30980364-30980443,
           30980685-30980756,30980860-30980901,30981009-30981170,
           30981276-30981427,30981453-30981538,30981654-30981726,
           30982706-30982889
          Length = 364

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   AAC-LAADLSKYENFDVEPIVTSDRLLKAYINWFLDKGRCTPEASDFKKALPDTIATNCG 177
           AAC LAA + +Y    V+P VT+D + KA     +D G   P    +    P ++ T+  
Sbjct: 148 AACELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDAG-AYPSPLGY-GGFPKSVCTSVN 205

Query: 178 KC 183
           +C
Sbjct: 206 EC 207


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 229 QQKHSTEWEKLVKKHD 276
           ++KH   WEKL++KHD
Sbjct: 400 RRKHGKAWEKLIEKHD 415


>01_01_0887 +
           6978869-6979053,6979183-6979558,6979651-6979734,
           6979838-6979903,6980938-6981007,6981333-6981718,
           6982114-6982154,6982661-6982757
          Length = 434

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 163 ATNCGKCTEKQKANVRKVIKVIQQKHSTEWEKLVKKH--DPSGKHRADFDK 309
           A N G   E++ A +R   K+ + K +  W K  +KH  +   K  AD+D+
Sbjct: 144 AVNQGGPWEERYAMIRLAQKLQKSKRNKRWRKRKRKHVAELFQKEHADYDR 194


>02_05_0875 +
           32393496-32393881,32395297-32395397,32395493-32395674,
           32396135-32396233,32396311-32396403
          Length = 286

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +1

Query: 217 IKVIQQKHSTEWEKLVKKHDPSGK 288
           +KVI++ + + WEKLVK++ P+G+
Sbjct: 260 LKVIEETNES-WEKLVKRNIPAGE 282


>02_05_0835 -
           32099966-32100111,32100418-32100465,32100673-32100770,
           32101269-32101348,32101615-32101686,32102260-32102301,
           32102382-32102543,32102971-32103199,32103681-32103747,
           32103907-32104003
          Length = 346

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 10  LAADLSKYENFDVEPIVTSDRLLKAYINWFLDKGRCTPEASDFKKALPDTIATNCGKC 183
           LAA + K+    VEP +T+D + KA     +D G   P    +    P ++ T+  +C
Sbjct: 118 LAAQVLKFAGTLVEPGITTDEIDKAVHQMIVDNG-AYPSPLGY-CGFPKSVCTSVNEC 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,252
Number of Sequences: 37544
Number of extensions: 280943
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)