Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2364
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 163 2e-41
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 29 0.56
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 0.97
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 2.3
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.0
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.9
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 3.9
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 5.2
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 26 5.2
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.9
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 6.9
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 6.9
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.1
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 163 bits (396), Expect = 2e-41
Identities = 70/122 (57%), Positives = 96/122 (78%)
Frame = +2
Query: 137 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 316
S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95
Query: 317 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 496
+EGIRFRG +IPECQ+ LP + G++PLPE LFWLLVTG+IPT +Q +ALS +WAAR++
Sbjct: 96 PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQ 155
Query: 497 LP 502
LP
Sbjct: 156 LP 157
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 501 PAHVVTMLNNMPGKLHSMSQFSAAVT 578
P V +++ P LH M+QFS AVT
Sbjct: 157 PKFVEELIDRCPPTLHPMAQFSLAVT 182
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 227 NHASFGIRGSSLVPWESFPGEYFLNSSVQRLDLEVELSQSD 105
N+ S G+RG ++ + +PG SV L++++ L + D
Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDIVLGEMD 634
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 125 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 247
LR L E NL+ + ++ +EQE+ + +++ S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 338 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 445
+G +PE + LP G P G+FWL TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 140 AEQTNLKSILQEKIPKEQEKIREFRKKHG 226
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 606 SEFRFTVECG*RQPRTVTWNAVCRAYCSTLSLR 508
++F FT PRT+ + +CR STL R
Sbjct: 56 AKFEFTKVYSESMPRTIPFTILCRKLASTLKQR 88
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 RGLSAEQTNLKSILQEKIPKEQEKIREF 211
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 327 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 223
P S+ VS TRP IP+ PP + +S + P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.9
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 369 CCWHSGMDRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 223
C W DRP R + PSSA+ T PL + PY+ S SPT++ P
Sbjct: 51 CIWP---DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 351 SLSANSNCPRLRVEKNHYPKVFSGFSSLAIYPPKRKLKRCLKNGQRGRSYPAHVVTMLN 527
+LS +SN PR+ + + + + + LKR +R YPA VV LN
Sbjct: 166 TLSPSSNLPRIPSDLYDIKQFLENLDARS-FKSDMDLKRSQNMRRRATGYPAIVVPFLN 223
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 279 ESKVWFGKPLCWM-----PMKES-VSVVYPSLS---ANSNCPRLRVEKNHYPKVFSGFSS 431
E++ + GK +C++ P++ S + V++ ++S NS R R N PK F
Sbjct: 41 EAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLR 100
Query: 432 LAIYP 446
+ +YP
Sbjct: 101 VMLYP 105
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 173 PGEYFLNSSVQRLDLEVELSQSDMLSA 93
P E + N VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 125 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 244
L+G E+ I E + +E++ FRK+ S++ E
Sbjct: 436 LKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 119 VLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 223
V+L A + S +E IPK++ E RKKH
Sbjct: 235 VILGEDEAMEEEALSEAEENIPKKKPDFNELRKKH 269
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 131 GLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTV 253
GL E+T+ + +EK+ KE E+ + K KV +V V
Sbjct: 523 GLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVV 563
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 134 LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 235
++ E ++ I+Q K KE++KIR GS+K
Sbjct: 353 VAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,005
Number of Sequences: 5004
Number of extensions: 51744
Number of successful extensions: 224
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -