Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2364
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 163 8e-41
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 159 1e-39
06_03_0159 - 17358853-17360781 29 2.3
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 5.4
03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309... 28 5.4
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 5.4
02_04_0607 - 24302582-24303075,24303150-24304197 28 5.4
09_06_0002 + 20121846-20123308,20123420-20123426 28 7.1
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 7.1
12_01_0529 + 4188135-4188677 27 9.4
06_01_0612 - 4429605-4431152 27 9.4
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 163 bits (397), Expect = 8e-41
Identities = 72/123 (58%), Positives = 97/123 (78%)
Frame = +2
Query: 137 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 316
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 317 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 496
DEGIRFRGLSIPECQ+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+
Sbjct: 94 PDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSS 153
Query: 497 LPG 505
+PG
Sbjct: 154 VPG 156
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 444 PPKRKLKRCLKNGQRGRSYPAHVVTMLNNMPGKLHSMSQFSAAVTRTQ 587
P K ++ K S P HV ++ +P H M+QF+ V Q
Sbjct: 136 PTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQ 183
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 159 bits (387), Expect = 1e-39
Identities = 70/123 (56%), Positives = 95/123 (77%)
Frame = +2
Query: 137 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 316
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 317 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 496
+EGIRFRGLSIPECQ+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+
Sbjct: 94 PEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSS 153
Query: 497 LPG 505
+PG
Sbjct: 154 VPG 156
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 444 PPKRKLKRCLKNGQRGRSYPAHVVTMLNNMPGKLHSMSQFSAAVTRTQ 587
P K ++ K S P HV ++ +P H M+QF+ V Q
Sbjct: 136 PTKEQVDALSKELVTRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQ 183
>06_03_0159 - 17358853-17360781
Length = 642
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 240 PTLVEPCFFRNSRIFSCSLG--IFSWRILFKFVCSALRPR 127
P L+ P F R+ R F L + S+ +L K VCS+L PR
Sbjct: 144 PHLLPPFFSRSLRRFPGRLAPTLLSFNLLLKCVCSSLVPR 183
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 330 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 235
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>03_01_0399 +
3097878-3098141,3098254-3098547,3098659-3098886,
3099148-3099224,3099501-3099540,3099737-3099802,
3100305-3100706,3100777-3100888,3101445-3101530,
3101607-3101672
Length = 544
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 380 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPGSRSDNVEQYARQ 541
A GG+ P PE W D+ E +AKA + A A S V+ A+Q
Sbjct: 2 ADGGKPPTPEKKSW----ADVEEEEEAKAKAAAAAEAASSSSSNEPAVDAQAKQ 51
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 351 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 223
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 247 HS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG*GW 390
H DVR H R G G AG + PF W+ HP + T A+ GW
Sbjct: 85 HGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRLVTEAAEN-GW 125
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 306 LCWMPMKESVSVVYPSLSANSNCPRLRVEKNHYPK--VFSGFSS 431
+C P+++S S+ +PS S+++NC + +PK V GFS+
Sbjct: 228 VCLSPLQQS-SLAHPSPSSSTNCSLWMTKSAIFPKEVVTRGFSA 270
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 355 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 257
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
>12_01_0529 + 4188135-4188677
Length = 180
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 359 CQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKA--LSKEWAARAELPGSRSDNVEQY 532
C + GGEE + W ++ A A LSKEW A L G + + ++
Sbjct: 75 CGNVSARFAGGEETKTMDMLWEDFNEELSRAAAAAPCPLSKEWTKEAWLAGDGTPEMRRH 134
Query: 533 ARQTA 547
A A
Sbjct: 135 AAAAA 139
>06_01_0612 - 4429605-4431152
Length = 515
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 339 RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPT-LVEPCFFR 211
R+R+P S S V+ P P++PP + ST P+ + P F R
Sbjct: 74 RRRLPPSPSVRVVAIPFPAHPQIPPGVESTDALPSQSLFPAFLR 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,989
Number of Sequences: 37544
Number of extensions: 369264
Number of successful extensions: 1212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -