Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2364
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 181 4e-46
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 31 0.69
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 31 0.69
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 0.91
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 30 1.2
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 29 2.8
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 29 2.8
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 29 2.8
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 29 2.8
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 29 2.8
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical p... 28 4.8
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 4.8
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 4.8
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 28 4.8
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 6.4
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 27 8.4
AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical... 27 8.4
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 8.4
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 8.4
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 181 bits (440), Expect = 4e-46
Identities = 86/151 (56%), Positives = 112/151 (74%), Gaps = 1/151 (0%)
Frame = +2
Query: 53 MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 229
MA+ R+ + ++ + + P +T SAE TNLK +L +KIP K++ FR +HGS
Sbjct: 6 MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59
Query: 230 TKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 409
T V V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 TVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPE 119
Query: 410 GLFWLLVTGDIPTEAQAKALSKEWAARAELP 502
++WLL TGD+P+EAQ A++KEW ARA+LP
Sbjct: 120 AIWWLLCTGDVPSEAQTAAITKEWNARADLP 150
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 501 PAHVVTMLNNMPGKLHSMSQFSAAV 575
P HVV ML+N P LH M+QF AA+
Sbjct: 150 PTHVVRMLDNFPDNLHPMAQFIAAI 174
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 535 PANCIPCHSSRLPSPALNSESKFA*AYSEGVHK 633
P N P ALN+ESKFA AY+ GV K
Sbjct: 161 PDNLHPMAQFIAAIAALNNESKFAGAYARGVAK 193
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 56 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 220
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 56 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 220
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 107 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 244
PT+T+ L L + NL S+ E+ K +EKI + R++ + + E
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRRKQESDLAE 2469
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 107 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 220
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 342 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 223
P + P ST Q RP PR PY+ + T+ +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 2 GFFVVDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKI 181
GF++ D + M ++ + V L KAC + GLS NL + KI
Sbjct: 261 GFYLRDCEKVMDQLVEPMRFLKLDNKEFVAL-KACVLFNPVAPGLSNHAVNLVLNARRKI 319
Query: 182 PKEQEKIREFRKKHGSTKVGEVT 250
EK K +T+VG++T
Sbjct: 320 FAAFEKYVRVNKPLETTRVGDLT 342
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 2 GFFVVDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKI 181
GF++ D + M ++ + V L KAC + GLS NL + KI
Sbjct: 317 GFYLRDCEKVMDQLVEPMRFLKLDNKEFVAL-KACVLFNPVAPGLSNHAVNLVLNARRKI 375
Query: 182 PKEQEKIREFRKKHGSTKVGEVT 250
EK K +T+VG++T
Sbjct: 376 FAAFEKYVRVNKPLETTRVGDLT 398
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 2 GFFVVDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKI 181
GF++ D + M ++ + V L KAC + GLS NL + KI
Sbjct: 262 GFYLRDCEKVMDQLVEPMRFLKLDNKEFVAL-KACVLFNPVAPGLSNHAVNLVLNARRKI 320
Query: 182 PKEQEKIREFRKKHGSTKVGEVT 250
EK K +T+VG++T
Sbjct: 321 FAAFEKYVRVNKPLETTRVGDLT 343
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 380 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 499
A G E+PLPE +W V+ EA AKA K AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 2 GFFVVDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKI 181
GF++ D + M ++ + V L KAC + GLS NL + KI
Sbjct: 283 GFYLRDCEKVMDQLVEPMRFLKLDNKEFVAL-KACVLFNPVAPGLSNHAVNLVLNARRKI 341
Query: 182 PKEQEKIREFRKKHGSTKVGEVT 250
EK K +T+VG++T
Sbjct: 342 FAAFEKYVRVNKPLETTRVGDLT 364
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 369 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRN 208
C W S + P+K++PS T Q ++ P +STV+ C+FR+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS 633
>AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical
protein E03H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 398 PLPEGLFWLLVTGDIPTEAQAKALSKEWAARAELPGSRSDNVEQYARQTAFHVTVLGCRH 577
P P G F+L V + + ++ + K ++ ++ G +S Y +TA +T +
Sbjct: 172 PRPVGAFYLAVLPSVGNKIKSTSFCKNLSSSLDIAGMQSKKEFDYVLKTAKFITGYTPDY 231
Query: 578 PHSTVNLN 601
++TV L+
Sbjct: 232 QYTTVWLS 239
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 56 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 235
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1019 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1078
Query: 236 VGEVTVDMM 262
+ + DM+
Sbjct: 1079 MWQAEKDML 1087
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 56 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 235
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 236 VGEVTVDMM 262
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical
protein C44C10.11 protein.
Length = 398
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 134 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 223
L+ E NLK L++K E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 297 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 202
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 297 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 202
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 56 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 235
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 236 VGEVTVDMM 262
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 144 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 19
S R +S+TVA H +CN+ + +L AI + ++K P HK
Sbjct: 34 SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 215 KKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQL 373
+KHG +GE+ + ++ I + VL DEGI FRGL I + Q L
Sbjct: 89 RKHGG--LGEMNIPVLADTNHQISR---DYGVLKEDEGIAFRGLFIIDPSQNL 136
>AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D3A.20 protein.
Length = 121
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 402 YPKVFSGFSSLAIYPPKRKLK 464
+P++F GFSS+ +PP K K
Sbjct: 30 FPRLFKGFSSIFHFPPLNKPK 50
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 198 FSCSLGIFSWRILFKFVCSALRPRSRTV 115
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 198 FSCSLGIFSWRILFKFVCSALRPRSRTV 115
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,901
Number of Sequences: 27780
Number of extensions: 295153
Number of successful extensions: 1022
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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