Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2363
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   3.7  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   4.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   8.6  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 267  EAAGRNLSGSSKKSTE 220
            +AAGR LSG+SKK+ E
Sbjct: 1910 DAAGRGLSGTSKKALE 1925


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -3

Query: 237 SKKSTEKILVNDHHFTEIIFHLKSSHLFHPS*LMSQINHLHFNSLHNIIFHKNMNRH*NK 58
           S  S   I   D++  E   + K+ HL         I H H + ++  + +  M    N 
Sbjct: 76  SVDSWSSITKYDNYTVENESYAKAWHLSEQRIKTFLITHCHLDHIYGAVINSAMFGPQNP 135

Query: 57  T*LKGLSYQVIKSLKK 10
             + GL+Y VI +LKK
Sbjct: 136 RTIVGLNY-VIDTLKK 150


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 203  SFTKIFSVDFLEDPDKLRPAASFHFPTFLHFHRYQTVNKLL 325
            SF  IFS  F E+P+  +    F  P  +   + Q +++LL
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELPLQVISSQSQNISQLL 1876


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 258 QRLRFIFPHFCTFTDIKQLINYYYYKFKPEETLN-RQNKTNHTTSLLAFP 404
           Q+L  IFP    F ++   + Y Y     ++ L  R N  +  TSLL  P
Sbjct: 489 QQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAP 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,364
Number of Sequences: 5004
Number of extensions: 42657
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)