Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2363
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +3

Query: 306 KQLINYYYYKFKPEETLNRQNKTNHTTSLLAFPPKSLFISLILF 437
           K+ +N+Y      E+ LN   +   T + ++    ++FI+++ F
Sbjct: 303 KRKVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKF 346


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 357 NRQNKTNHTTSLLAFPPKSLFISLI 431
           +R+N T++TTS+ +F P +L  SL+
Sbjct: 621 SREN-TSNTTSMESFKPPTLTESLL 644


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -3

Query: 228  STEKILVNDHHFTEIIFHLKSSHLFHPS*LMSQINHLHFNSLHNIIFHKNMNRH*NKT*L 49
            S   + V     + I+ H KS H    S L      LH+ + H  +    ++RH     L
Sbjct: 1406 SAPVLYVTSSTSSSILLHWKSGHNGGAS-LTGYT--LHYRTAHGNLDELQLSRHATSHEL 1462

Query: 48   KGL 40
            KGL
Sbjct: 1463 KGL 1465


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -3

Query: 228  STEKILVNDHHFTEIIFHLKSSHLFHPS*LMSQINHLHFNSLHNIIFHKNMNRH*NKT*L 49
            S   + V     + I+ H KS H    S L      LH+ + H  +    ++RH     L
Sbjct: 1402 SAPVLYVTSSTSSSILLHWKSGHNGGAS-LTGYT--LHYRTAHGNLDELQLSRHATSHEL 1458

Query: 48   KGL 40
            KGL
Sbjct: 1459 KGL 1461


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 174 LKSSHLFHPS*LMSQINHLHFNSLHNIIFHKNMNRH 67
           LKS+   HP  ++  +     ++L   I+H  +N H
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVH 96


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  SYFNVYSYFYEK*YYGVN 110
           +Y N Y+  Y+K YY +N
Sbjct: 339 NYNNNYNNNYKKLYYNIN 356


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 221 SVDFLEDPDKLRPAASFHFPTFLH 292
           SV   E   KLRP +SF  P F +
Sbjct: 202 SVFKAEVGSKLRPRSSFQGPPFTY 225


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 294 KC--KNVGK*NEAAGRNLSGSSKKSTEKILVNDHHFTEIIFHLKSSHL 157
           KC  +NV   N     NLSG S   T  +L  D   +  I +    HL
Sbjct: 710 KCHNRNVTTCNMFRKTNLSGDSSSGTTLLLELDDIASMEILYKPGDHL 757


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,222
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)