Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2362
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator prot...    29   2.2  
Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator protein
           18 protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 179 FRQEYTLDKQY*SILNLTTDFKQ*QKFDNKHRVSNIW 289
           F  E +   +   I+++ TD K  ++F  +HR+ N W
Sbjct: 58  FEHEMSFSLRSSGIMDIKTDIKLRRRFRTEHRIQNYW 94


>Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical
           protein K08G2.5 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 542 RPLYITRFRYYYNSCHTYPAPMYLIYILIREAKLCSPFYNNCAVGGI*SFPQ 387
           R LY   F   Y    T+P P+YL      + KL S   N+C    + + PQ
Sbjct: 133 RKLYRLLFATAYALALTFPVPIYLSLPNQEDGKLVSQNSNHCVPSEVFNNPQ 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,485
Number of Sequences: 27780
Number of extensions: 188954
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)