Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2361
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    30   0.28 
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.4  

>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/56 (26%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = -1

Query: 657 ITLLDKLLL--VSLYMYNYRTLHICNLYSGLHVIQGTVK--KNIQSYSLDQLTDNF 502
           + LL +L +  +S+ +  Y TLH+ + Y+GL   +  V+  +++Q+  L++ +D++
Sbjct: 208 VPLLKRLTIGKISITLKEYITLHVAHGYNGLPASKDEVRTVRSLQTEELEEFSDHY 263


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 474 SFSENEEYIKSCPSVDQENMTECSSLLSLV*HVTRSIDCRYGGFYNYTC 620
           SF ++ ++++ CP+ D E   EC    + +  V  ++ C  G  + + C
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGKQFCFGC 254


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 567 VIQGTVKKNIQSYSLDQLTDN 505
           +IQG +KKN++ + LD+L ++
Sbjct: 901 LIQGFLKKNLEEFGLDELLED 921


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  KHSRLFYFDFISNNEHNTCHRY 114
           KH ++ Y DF+  ++ +TC RY
Sbjct: 26  KHDKVDYKDFVRRDDGDTCLRY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,593
Number of Sequences: 5004
Number of extensions: 51643
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)