Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2359
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    30   1.2  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    30   1.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   5.0  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    28   6.7  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    28   6.7  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    28   6.7  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    28   6.7  

>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 314 PQPPSCLPFPRRLYWRVKLLRRPPWPPFQLCDHPRPP 424
           P PPS +P P RL   +     PP PP  +   P PP
Sbjct: 773 PPPPSAIPLPPRLQGGI-----PPPPPLGIIPPPPPP 804


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 314 PQPPSCLPFPRRLYWRVKLLRRPPWPPFQLCDHPRPP 424
           P PPS +P P RL   +     PP PP  +   P PP
Sbjct: 773 PPPPSAIPLPPRLQGGI-----PPPPPLGIIPPPPPP 804


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 314 PQPPSCLPFPRRLYWRVKLLRRPPWPPFQLCDHPRPPSRP 433
           P PPS  P P  +     +  RPP PP      P PP  P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 314 PQPPSCLPFPRRLYWRVKLLRRPPWPPFQLCDHPRPPSRP 433
           P PPS  P P  +     +  RPP PP      P PP  P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 377 RPPWPPFQLCDHPRPPSRPPKY 442
           RPP PP +L   PRPP  PP+Y
Sbjct: 149 RPP-PPVELSPPPRPPP-PPEY 168


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 377 RPPWPPFQLCDHPRPPSRPPKY 442
           RPP PP +L   PRPP  PP+Y
Sbjct: 790 RPP-PPVELSPPPRPPP-PPEY 809


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 377 RPPWPPFQLCDHPRPPSRPPKY 442
           RPP PP +L   PRPP  PP+Y
Sbjct: 790 RPP-PPVELSPPPRPPP-PPEY 809


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 377 RPPWPPFQLCDHPRPPSRPPKY 442
           RPP PP +L   PRPP  PP+Y
Sbjct: 790 RPP-PPVELSPPPRPPP-PPEY 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,684
Number of Sequences: 27780
Number of extensions: 268671
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)