Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2356
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.63 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   3.4  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   3.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.4  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    25   5.9  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   5.9  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   7.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.7  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 375 KFEITVPDELKDYLHDIHSAKVEN 446
           +++  VP +++DY +D+HS  ++N
Sbjct: 317 EYDFLVPSKIQDYFYDVHSLLLKN 340


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 381 EITVPDELKDYLHDIHSAKVENAHKE 458
           E    D L++YLHD+     E+A KE
Sbjct: 698 EFLSSDTLREYLHDVFFLPPEHAQKE 723


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 386 YFKLVKCVFVYWGLR*FYPKTIF 318
           YF  ++C+   W L+ +YPKT++
Sbjct: 153 YFS-IECLLYLWALKIWYPKTLW 174


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 466 FWNSLCAFSTFALWMSW 416
           FW+ L     FA WMSW
Sbjct: 331 FWDGLWLNEGFATWMSW 347


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 551 RRSEKAQRESTASTARSGTVPDE 483
           R+S K  RE   STA SGTV  E
Sbjct: 182 RKSRKRTREYFVSTAESGTVQME 204


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 267 LVIEYLEWDNCYTEIVPK 320
           L +EY +W+  + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 60  LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 209
           +D+E+ +  + + QP S FP  Q  L  K +   K +      +  +FA S+
Sbjct: 60  IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 NCYTEIVPKDRLRVKL 341
           N YT+IVP D+ RV+L
Sbjct: 462 NRYTDIVPYDKTRVRL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,783
Number of Sequences: 5004
Number of extensions: 45840
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)