Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2356
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0476 - 18547223-18548187,18548743-18549958 27 1.1
03_05_0205 - 21965782-21965979,21969169-21969417 29 2.0
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 4.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 6.0
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 6.0
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 27 7.9
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477... 27 7.9
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 7.9
03_02_0174 + 6142472-6142849 27 7.9
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 27.1 bits (57), Expect(2) = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 468 PSGTPCARSPPSRCGCR 418
PSGTP PP+R GC+
Sbjct: 330 PSGTPRPGPPPTRTGCQ 346
Score = 21.8 bits (44), Expect(2) = 1.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -3
Query: 306 PCNSYPILDILSQGNHP 256
PC +Y + + + NHP
Sbjct: 355 PCRTYRVAKFVPEHNHP 371
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 453 CARSPPSRCGCRGGSPSVHQVL 388
C R+PPS C G P+V++V+
Sbjct: 16 CRRAPPSAAACGGARPAVYRVV 37
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 99 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIE 278
+P+S +P S + + G T ++ + +V E+E C W M+ IE
Sbjct: 451 EPDSAYPDSDLHVSHIFGGSTTYSSKREYKKV-----EREVCSTWQGAAPKMKWSEQKIE 505
Query: 279 YLEWDNCYTEIVP 317
+ E D+ T ++P
Sbjct: 506 FSEEDHPKTSVIP 518
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 477 RRSPSGTPCARSPPSRCGCRGG 412
+ S PCA SPP+R CRGG
Sbjct: 46 KASSEALPCAASPPAR--CRGG 65
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +3
Query: 273 IEYLEWDNCYT-EIVPKDR 326
++YL++DNCY I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 102 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 215
P+S+ P+ LPP + K FTE V+ + + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358
>06_01_0658 +
4772855-4772983,4773108-4773218,4773335-4773366,
4773469-4773637,4773728-4773934,4774318-4774362
Length = 230
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +3
Query: 9 EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEV 188
E+ E G+ Y V +L + V F W FS+ +LP +D E+ E
Sbjct: 120 ELEEELGSDYPIFVKPMLQSHVTGGF---WLSLPTH-FSRKYLPKRDETIRLVDEEDDEF 175
Query: 189 EVFARSNEKEACGWW---TANIKMMRGDFLVIEYLE 287
+ +N++ G W + K++ GD LV + ++
Sbjct: 176 DTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQ 211
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 166 SVCLPVSLGGKKT*ENGNF 110
SVC PVSLGG+ + +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263
>03_02_0174 + 6142472-6142849
Length = 125
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 419 RHPQREGGERAQGVPEGDRRRARLV 493
R P R GG R QG G R RA++V
Sbjct: 78 RRPWRRGGARGQGRGGGARGRAKVV 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,527
Number of Sequences: 37544
Number of extensions: 323497
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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