Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2355
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7TA68 Cluster: Predicted protein; n=6; Eumetazoa|Rep: ...    35   2.2  
UniRef50_Q4A7G8 Cluster: Putative uncharacterized protein; n=4; ...    33   6.7  
UniRef50_Q1MR43 Cluster: Alginate O-acetylation protein; n=1; La...    33   6.7  

>UniRef50_A7TA68 Cluster: Predicted protein; n=6; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 132

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 20/87 (22%), Positives = 48/87 (55%)
 Frame = -2

Query: 303 ILYFHNQLNIGVVTNHWIPLHPLNVFQRYLFTYLLNRATFVHIYVKVVEQFIFNHLNVIH 124
           +LY H  +N+ +  +  + +  L++    L+ Y+     ++HI V V+  +++  +NV+ 
Sbjct: 26  VLYLHISVNV-LYLHISVNVLYLHISVNVLYLYISVNVLYLHISVNVL--YLYISVNVL- 81

Query: 123 *RYCYIPLVLIQLFLRVGQLFMYVLIS 43
             Y YI + ++ L + V  L++Y+ ++
Sbjct: 82  --YLYISVNVLYLHINVNVLYLYISVN 106


>UniRef50_Q4A7G8 Cluster: Putative uncharacterized protein; n=4;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 222

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 472 NHISLVNNLIFIWNCHVQISKNKKTVDTYFI*ISLKIYIRSFLLE-LGFTIFEYCTII*I 648
           NHI  V NL++ +N ++  SK    +D +     L  +   FL   L + I   C +I +
Sbjct: 90  NHIYGVVNLLYFYNFYLLKSKKSLQIDIFIFSSFLISFHLGFLFSFLSYLIVSLCFLI-L 148

Query: 649 PVHIKYGLGFFLNLK 693
            V + + L FFLN K
Sbjct: 149 TVFVVF-LDFFLNQK 162


>UniRef50_Q1MR43 Cluster: Alginate O-acetylation protein; n=1;
           Lawsonia intracellularis PHE/MN1-00|Rep: Alginate
           O-acetylation protein - Lawsonia intracellularis (strain
           PHE/MN1-00)
          Length = 478

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 537 QKDGRYLLHLNFLKNLHQIISFGIGFHDIRILHYYLNS 650
           Q + +YLL++ F+K +H IIS+ + FH +  L  +  +
Sbjct: 354 QTNVQYLLNIPFIKTIHYIISWALTFHFVSFLWIFFRA 391


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,977,779
Number of Sequences: 1657284
Number of extensions: 13140642
Number of successful extensions: 25195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25189
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)