Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2355
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    27   2.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   6.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.9  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 549 RYLLHLNFLKNLHQIISFGIGFHDIRILHYYLNSRTYKIWF 671
           +YL+  NF  +    + FG+G   I I   +L   TY+ WF
Sbjct: 87  KYLVFANF--STKDRVLFGLGNGGINIFSMWLLLATYETWF 125


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 234 NVFQRYLFTYLLNRATFVHIYVKVVEQFIFNHL--NVIH*RYCYIPLVLIQLFLRVGQLF 61
           NVF R+ F Y L       I+V  V  F+ N +   +++ R+ +  +   Q  +  G   
Sbjct: 216 NVFNRFRFLYALGYGRLFGIFVLCVSLFLVNIIADRILYGRFVFPIISFFQFNVTSGLSS 275

Query: 60  MYVL 49
           +Y L
Sbjct: 276 LYGL 279


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 117 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 22
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 361 WLTDTKLYNLVSLLKTNVNK 420
           WLT    + L+SL++TN NK
Sbjct: 133 WLTTDGTHQLLSLMETNFNK 152


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 117 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 22
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 240 PLNVFQRYLFTYLLNRATFVHIYVKVV 160
           PLN+ ++  F Y L  A F HI  K +
Sbjct: 280 PLNLSEKKFFAYQLQYAAFQHICQKTL 306


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 430 RLLHSK*NL*ARERNHISLVNNLIFIWNCHVQISKNK 540
           RLL     L  +ER++++  +N++F W+   Q  K K
Sbjct: 121 RLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,123
Number of Sequences: 5004
Number of extensions: 64097
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)