Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2355
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028...    31   1.2  
08_02_0183 + 13936759-13936807,13936885-13936971,13937069-139372...    28   6.2  

>12_02_0656 +
           21601782-21601925,21602249-21602460,21602686-21602813,
           21602905-21602986,21603308-21603406,21603619-21604054,
           21604280-21604350,21604438-21604523,21604740-21604750
          Length = 422

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 329 LFLLHRDVDMFG*-LILSYIISFHYSKPTLTKYTCVCYIP 445
           L LL   V +FG    +S++ISF YS  T   Y+C  +IP
Sbjct: 42  LVLLDEQVTLFGPDQSISFLISFVYSLLTALTYSCANFIP 81


>08_02_0183 +
           13936759-13936807,13936885-13936971,13937069-13937202,
           13937830-13938024,13939283-13939341,13939409-13939463,
           13939577-13939624,13941215-13941248,13941425-13941478,
           13942450-13942493,13942771-13942818,13942901-13943020,
           13943132-13943212
          Length = 335

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 507 LELPCSNF*KQKDGRYLLHLNFLKNLHQIISFGIGFHDIRILHYYLNSRTYKIWFGFFFK 686
           LE+ C+   KQ+ G+  +  NF   L    +    FH+    HYY++  T   +  +FF+
Sbjct: 81  LEIECATL-KQRQGKNFVVTNF-GTLLTYANTSTTFHNT---HYYISELTINRYEAYFFR 135

Query: 687 S 689
           S
Sbjct: 136 S 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,448
Number of Sequences: 37544
Number of extensions: 317656
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)