Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2354
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  
UniRef50_Q014L0 Cluster: Chromosome 07 contig 1, DNA sequence; n...    33   7.7  
UniRef50_Q9W379 Cluster: CG9060-PA; n=6; Endopterygota|Rep: CG90...    33   7.7  
UniRef50_Q4D7V1 Cluster: Ubiquitin-protein ligase-like, putative...    33   7.7  

>UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1;
           Bradyrhizobium sp. BTAi1|Rep: Putative uncharacterized
           protein - Bradyrhizobium sp. (strain BTAi1 / ATCC
           BAA-1182)
          Length = 164

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 502 EPRTGRYHRPAYFCREAVMRFGLKGG 425
           +P    Y R AYF  EAV RFG +GG
Sbjct: 31  QPMNAAYRRRAYFDYEAVTRFGARGG 56


>UniRef50_Q014L0 Cluster: Chromosome 07 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 07 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 128

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 170 RSTRPNSTSTCRYVRDACVVDIRAS 96
           R TRPN TS C Y R+ C   + AS
Sbjct: 5   RVTRPNVTSACPYARNVCSASVNAS 29


>UniRef50_Q9W379 Cluster: CG9060-PA; n=6; Endopterygota|Rep:
           CG9060-PA - Drosophila melanogaster (Fruit fly)
          Length = 457

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 219 AASADITVDSVRDHTSAEHPPELNINLQVRPRRLCSRYTCIHG 91
           A+  D+T D ++  T +   PEL+  L+V P  LC R+T + G
Sbjct: 318 ASREDLTRDVLKSETCSMSIPELD--LEVGPHALCGRFTTVEG 358


>UniRef50_Q4D7V1 Cluster: Ubiquitin-protein ligase-like, putative;
            n=2; Trypanosoma cruzi|Rep: Ubiquitin-protein
            ligase-like, putative - Trypanosoma cruzi
          Length = 4125

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = -3

Query: 191  ACATTPARSTRPNSTSTCRYVRDACVVDIRASTDVMGQISIV 66
            A A +PA  T   S ST + VRDA  V++R S DV+G  SI+
Sbjct: 1766 AVAVSPASLTSAGSNSTRKAVRDAPKVELRLS-DVLGITSIL 1806


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,045,363
Number of Sequences: 1657284
Number of extensions: 12211479
Number of successful extensions: 28236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28231
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)