Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2354
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 197  WTACATTPARSTRPNSTST 141
            WT   T    +TRP +TST
Sbjct: 1052 WTTTTTRRTTTTRPTTTST 1070


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 437 TETHYCFTAEIGGAMVPTRAGLTRGLTTSNYPNYN 541
           T T Y ++A   G   P+ +   +G ++S + NY+
Sbjct: 117 TATEYKYSAAAPGPSDPSVSSCHQGFSSSTWCNYS 151


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 482 PSPRLFLP*SSNAFRFEGWGSPCNYTEKKIA*STFFP 372
           PSPR+    +S + + E   +  N  EKKI  S   P
Sbjct: 175 PSPRITKKANSVSVKVENRRNSPNSCEKKIGLSKISP 211


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 482 PSPRLFLP*SSNAFRFEGWGSPCNYTEKKIA*STFFP 372
           PSPR+    +S + + E   +  N  EKKI  S   P
Sbjct: 123 PSPRITKKANSVSVKVENRRNSPNSCEKKIGLSKISP 159


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 482 PSPRLFLP*SSNAFRFEGWGSPCNYTEKKIA*STFFP 372
           PSPR+    +S + + E   +  N  EKKI  S   P
Sbjct: 306 PSPRITKKANSVSVKVENRRNSPNSCEKKIGLSKISP 342


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,341
Number of Sequences: 336
Number of extensions: 3142
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)