Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2354
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   2.3  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   9.2  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   9.2  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 424 PHPSNRNALLLHGRNRRGDGTYPCGAHKRS 513
           PHP N   +LL G N + D + P   + R+
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRT 126


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 547 GFNFYYTMLFLHPWKSI 597
           GF  Y+ M+F H WK I
Sbjct: 196 GFKKYFEMIFRHGWKYI 212


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  ITSVDARISTTQASRTYLQVDVEF 156
           ++++D  +   QA  TY+  DVEF
Sbjct: 38  VSTLDRVVKNVQAPATYIPTDVEF 61


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 249 EVPETAHDVTAASADITVDSVRDHTSAEHPPELNINL 139
           +VPE+     AA A   V +  + T+  +PPE+  NL
Sbjct: 263 QVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPRNL 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,876
Number of Sequences: 5004
Number of extensions: 50016
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)