Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2354
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         30   1.3  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    28   5.4  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    27   9.5  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 DGWTSWEKCRLSNFFFSIVTRAAPPFKPKRITA 455
           DGW SW          S+ + AAPPF P RIT+
Sbjct: 158 DGWWSWS---------SVASAAAPPFDPSRITS 181


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 225 VTAASADITVDSVRDHTSAEHPPELNINLQVRP 127
           + AASAD  VD+V + ++A H P   I+  V P
Sbjct: 441 MAAASADPLVDAVHNFSNATHIPSFFISFIVMP 473


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 393 CLIDIFPSSSTHLSNKKMYVK 331
           C +D+  SSS H+S K  YVK
Sbjct: 405 CSVDLMESSSVHMSYKCSYVK 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,492
Number of Sequences: 37544
Number of extensions: 350750
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)