Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2353
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 153 1e-38
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 5e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 3e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 7e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 55 7e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 44 2e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 42 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 2e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.5
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 25 4.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 6.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 153 bits (372), Expect = 1e-38
Identities = 69/77 (89%), Positives = 74/77 (96%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITALAPSAMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 308
+SGGT MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 299 MSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWIS 358
Query: 307 KQEYDESGPSIVHRKCF 257
KQEYDESGP IV+RKCF
Sbjct: 359 KQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 5e-14
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Frame = -1
Query: 481 GGTAMYPGIADRMQKEITALAPSAMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 311
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 310 SKQEYDESGP---SIVHRKC 260
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.3 bits (162), Expect = 3e-13
Identities = 31/77 (40%), Positives = 53/77 (68%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITALAPSAMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 308
LSGG+ + G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 307 KQEYDESGPSIVHRKCF 257
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.1 bits (159), Expect = 7e-13
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITALAP-SAMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 314
++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 313 ISKQEYDESG 284
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 54.8 bits (126), Expect = 7e-09
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 12/80 (15%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITAL--------APSAM---KIKIIAPPERKYSVWIGGSILA 341
LSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 299 LSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLA 358
Query: 340 S-LSTFQQMWISKQEYDESG 284
++ MW+SK E++E G
Sbjct: 359 DIMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITALAPSAMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 308
++GG PG+ R+++E+T++ P I + W G S + F+ ++
Sbjct: 640 ITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVT 699
Query: 307 KQEYDESGPSIV 272
++EY E GP +
Sbjct: 700 REEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.3 bits (95), Expect = 4e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 481 GGTAMYPGIADRMQKEITALAPSAMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 302
GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 301 EYDESGPSIVHRK 263
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.9 bits (89), Expect = 2e-04
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Frame = -1
Query: 487 LSGGTAMYPGIADRMQKEITALAPS--------------AMKIKIIAPPERKYSVWIGGS 350
LSGG+ ++ +R+Q+++ + + + +I+ ++ +VW GGS
Sbjct: 332 LSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGS 391
Query: 349 ILASLSTFQQMWISKQEYDESGPSIVHR 266
+LA F +K +Y+E G SI R
Sbjct: 392 LLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 481 GGTAMYPGIADRMQKEITALAPSAMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 311
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 310 SKQEYDESGPSIVHRK 263
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.86
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 364 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 263
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 372 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 277
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 330 VEREARIDPPIHTEYFLSGGAMILIFIADGARAVISFCIRSAIPG 464
+ + R+DP + ++++F+A R SFCI S+ G
Sbjct: 104 INQNIRLDPKYSIPGVCAVTLIVIMFLAPVGRLFWSFCIVSSFAG 148
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 482 RWYRHVPWNRRPYAKGNHSSRPIGNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 303
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLNYT---SEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 302 GV 297
V
Sbjct: 534 AV 535
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 439 KEITALAPSAMKIKIIAPPERKYSVWIGGSILASLST 329
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 305 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 391
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 337 LSTFQQMWISKQEYDESGPSIV 272
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 383 WRSNDLNLHCRWGESCD 433
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 8.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 369 PYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 202
P SVD S+PPS P S + S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,358
Number of Sequences: 5004
Number of extensions: 34119
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -