Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2352
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9YVM7 Cluster: ORF MSV215 SCG gene family protein; n=1...    35   2.2  
UniRef50_Q4Z409 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  

>UniRef50_Q9YVM7 Cluster: ORF MSV215 SCG gene family protein; n=1;
           Melanoplus sanguinipes entomopoxvirus|Rep: ORF MSV215
           SCG gene family protein - Melanoplus sanguinipes
           entomopoxvirus (MsEPV)
          Length = 370

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 421 TKMFQTIIKLLIIFHIQSSIYNGTTHYFNSPRLYAETTVI 540
           +K     I+ + +  + SS YNG+  YFN+  LYA+TT I
Sbjct: 225 SKYINLAIETIFLDTVISSCYNGSITYFNNNGLYAQTTFI 264


>UniRef50_Q4Z409 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 61

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 269 INNIISSHLSLYKNKISSVCKQWDQAVGSYVEKLYF*INNIQQPYKYLY 415
           I  +++  L  +KNK+S   KQW  +V  Y    Y+  NN   P+KY Y
Sbjct: 5   ILKVLNRKLIKWKNKLSENNKQWPLSVDPYRHTKYYLHNN--HPFKYTY 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,548,179
Number of Sequences: 1657284
Number of extensions: 11896891
Number of successful extensions: 28121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28087
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)