Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2352
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   7.8  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +1

Query: 406 VPLFYTKM--FQTIIKLLIIF----HIQSSIYNGTTHYFN 507
           VP F+ +M  F +I+  L  F    H+  SIY+ T H+F+
Sbjct: 25  VPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFH 64


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 168 SFLKCFKNVLEECCNF 121
           +FL+CF ++L  CC F
Sbjct: 718 NFLRCFASLLHNCCIF 733


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 418 YTKMFQTIIKLLIIFHIQSSIYNGTTHYFNSPRLYAETTVI 540
           Y +  +T+I  + +F +   I +G TH+    +L A   ++
Sbjct: 363 YFESLETVILFVSVFLVNYLIQDGATHWLEGVQLLALYAIV 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,375
Number of Sequences: 5004
Number of extensions: 57241
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)