Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2352
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical p...    28   5.5  
AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical
           protein R10E11.9 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 415 FYTKMFQTIIKLLIIFHIQSSIYNGT----THYFNSPR 516
           F  K+F  I+ L +I +++S  YN        YFNSPR
Sbjct: 3   FLFKLFVLILNLTLISNVKSQSYNDVICRRPWYFNSPR 40


>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 169 SWSNLSTFEPTLHLYVQTLTHILFYISVFLYVCN 270
           +WS  +T  P     VQ L+ I+FYIS F Y  N
Sbjct: 298 TWSETTTISPP----VQFLSMIVFYISGFCYYSN 327


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +2

Query: 311 KISSVCKQWD-----QAVGSYVEKLYF*INNI-QQPYKYLYFIPKCF 433
           K+ S+C  W      +    Y++     + N+ Q+PY Y YF  +CF
Sbjct: 363 KVKSICDVWPDFNERERNKQYIKTEMNQVPNVNQEPYAYEYFFRRCF 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,417
Number of Sequences: 27780
Number of extensions: 307542
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)