Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2350
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    32   0.063
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.5  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +1

Query: 37  QRYNILHRPNFALPTFRFVMTKQINKSR*NIRLKRYKTKHVLKPKNILINNVEVNTVV*F 216
           ++YN   R    L  + F +  Q+N SR  I L  Y  K +      + + + V  ++  
Sbjct: 522 EKYNFTSRKRLGLSPYTFTLENQLNISRPEISLS-YDGKFISPGIKDIASLLNVRKLISS 580

Query: 217 KYKIMLIKKKDY--TFINHIVG 276
              I L+ K+ +   F NH +G
Sbjct: 581 PAIIQLVSKRSHPMAFSNHFIG 602


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 303 PYYLSFDYCTYYMIDKCIILFFNQHDFV-FKLH 208
           P+YL  D CT ++ + C     NQ+D V  K+H
Sbjct: 122 PFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVH 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,791
Number of Sequences: 5004
Number of extensions: 49407
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)